Wall clock time and date at job start Mon Mar 30 2020 01:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31044 * 1 3 3 Si 1.86800 * 120.00094 * 2 1 4 4 H 1.48492 * 109.47361 * 274.15110 * 3 2 1 5 5 H 1.48500 * 109.46778 * 34.15592 * 3 2 1 6 6 H 1.48499 * 109.46804 * 154.15166 * 3 2 1 7 7 C 1.39752 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00119 * 190.85084 * 7 2 1 9 9 C 1.40882 * 120.00055 * 10.85320 * 7 2 1 10 10 C 1.38952 * 126.94901 * 6.56060 * 9 7 2 11 11 N 1.35779 * 109.29234 * 179.97438 * 10 9 7 12 12 H 0.97005 * 124.67862 * 179.97438 * 11 10 9 13 13 C 1.37513 * 110.63873 * 0.24218 * 11 10 9 14 14 C 1.39365 * 133.98391 * 180.45228 * 13 11 10 15 15 C 1.37841 * 118.90601 * 179.60591 * 14 13 11 16 16 N 1.32215 * 121.43858 * 359.72549 * 15 14 13 17 17 C 1.31847 * 122.10431 * 0.02562 * 16 15 14 18 18 C 1.38871 * 120.19788 * 359.97438 * 17 16 15 19 19 H 0.97004 * 119.99801 * 359.97438 * 1 2 3 20 20 H 1.07997 * 125.35236 * 359.96187 * 10 9 7 21 21 H 1.08003 * 120.55021 * 359.32756 * 14 13 11 22 22 H 1.08002 * 119.28047 * 179.74482 * 15 14 13 23 23 H 1.08005 * 119.89833 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2445 1.6177 0.0000 4 1 2.4042 2.0971 -1.3963 5 1 1.4886 2.6256 0.7861 6 1 3.5831 1.4163 0.6104 7 6 2.0091 -1.2103 -0.0005 8 1 3.0747 -1.2188 0.1755 9 6 1.3236 -2.4194 -0.2308 10 6 -0.0090 -2.5675 -0.5955 11 7 -0.2950 -3.8887 -0.7229 12 1 -1.1631 -4.2442 -0.9700 13 6 0.8142 -4.6535 -0.4475 14 6 1.0666 -6.0241 -0.4375 15 6 2.3312 -6.4663 -0.1132 16 7 3.3034 -5.6199 0.1810 17 6 3.1196 -4.3143 0.1815 18 6 1.8755 -3.7840 -0.1339 19 1 -0.4850 0.8401 0.0004 20 1 -0.7075 -1.7590 -0.7528 21 1 0.2831 -6.7283 -0.6755 22 1 2.5324 -7.5273 -0.0996 23 1 3.9393 -3.6553 0.4271 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085210507.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:27 Heat of formation + Delta-G solvation = 34.287192 kcal Electronic energy + Delta-G solvation = -10714.990270 eV Core-core repulsion = 8720.259160 eV Total energy + Delta-G solvation = -1994.731110 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.73690 -38.44803 -35.52311 -32.63968 -31.23669 -29.80837 -26.89300 -24.13856 -22.88551 -21.51689 -19.22168 -17.91024 -17.28575 -16.57641 -15.83788 -15.24527 -15.12462 -14.75627 -14.39038 -13.36725 -13.32176 -13.15464 -12.91613 -12.33233 -11.84214 -11.62965 -11.27610 -10.32448 -10.23867 -9.33385 -8.62689 -8.48303 -6.03737 0.33169 0.92025 1.40250 1.44611 1.56984 2.22201 2.30049 2.73352 3.12669 3.58164 3.84325 4.10169 4.49599 4.54477 4.72924 5.02660 5.10096 5.21997 5.34201 5.77697 5.79425 6.06639 6.33548 6.66072 7.03604 7.10083 7.27550 7.41395 8.52859 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.063403 B = 0.011989 C = 0.010163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.511707 B = 2334.964329 C = 2754.432270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.019 3.981 3 Si 0.986 3.014 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.070 0.930 9 C -0.003 4.003 10 C -0.112 4.112 11 N -0.569 5.569 12 H 0.415 0.585 13 C 0.098 3.902 14 C -0.196 4.196 15 C 0.076 3.924 16 N -0.544 5.544 17 C 0.143 3.857 18 C -0.216 4.216 19 H 0.282 0.718 20 H 0.177 0.823 21 H 0.153 0.847 22 H 0.183 0.817 23 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -4.493 -1.335 4.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.190 4.190 3 Si 0.809 3.191 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.491 4.491 8 H 0.089 0.911 9 C -0.010 4.010 10 C -0.236 4.236 11 N -0.172 5.172 12 H 0.252 0.748 13 C -0.021 4.021 14 C -0.220 4.220 15 C -0.074 4.074 16 N -0.256 5.256 17 C -0.019 4.019 18 C -0.225 4.225 19 H 0.092 0.908 20 H 0.193 0.807 21 H 0.170 0.830 22 H 0.200 0.800 23 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.173 -4.667 -1.157 4.811 hybrid contribution -1.084 1.094 -0.289 1.566 sum -1.257 -3.573 -1.446 4.054 Atomic orbital electron populations 1.69653 1.08401 1.29437 1.40554 1.26517 0.95696 1.03796 0.92970 0.85101 0.78819 0.76330 0.78892 1.19275 1.19652 1.18632 1.19005 0.95515 0.90681 1.43857 0.91146 1.18454 0.92500 0.90210 0.99829 1.22853 0.99282 0.83355 1.18100 1.41241 1.10201 1.05496 1.60252 0.74762 1.18699 0.88235 0.93357 1.01800 1.21177 1.00139 0.91160 1.09513 1.22697 0.88060 1.00110 0.96571 1.67687 1.35182 1.03083 1.19670 1.22064 0.94441 0.91371 0.93976 1.20630 0.95868 0.95492 1.10522 0.90779 0.80672 0.82957 0.80027 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.22 10.57 21.80 0.23 -43.99 14 2 C 0.02 0.99 5.45 85.18 0.46 1.45 14 3 Si 0.99 39.48 29.57 68.60 2.03 41.51 14 4 H -0.27 -10.41 7.11 99.48 0.71 -9.70 14 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 14 6 H -0.26 -10.31 7.11 99.48 0.71 -9.60 14 7 C -0.46 -25.22 9.41 23.28 0.22 -25.00 14 8 H 0.07 3.76 7.87 -2.91 -0.02 3.73 14 9 C 0.00 -0.18 6.07 -20.01 -0.12 -0.30 14 10 C -0.11 -5.70 10.85 84.25 0.91 -4.78 14 11 N -0.57 -24.17 5.97 -184.77 -1.10 -25.28 14 12 H 0.42 13.89 8.96 -92.70 -0.83 13.06 14 13 C 0.10 4.30 7.30 39.14 0.29 4.59 14 14 C -0.20 -6.93 10.14 22.45 0.23 -6.70 14 15 C 0.08 2.65 11.14 84.54 0.94 3.59 14 16 N -0.54 -22.46 10.35 -195.38 -2.02 -24.49 14 17 C 0.14 6.52 11.25 84.84 0.95 7.47 14 18 C -0.22 -10.77 6.37 -20.07 -0.13 -10.90 14 19 H 0.28 13.34 8.30 -92.71 -0.77 12.57 14 20 H 0.18 9.21 5.94 -2.91 -0.02 9.19 14 21 H 0.15 4.08 8.06 -2.91 -0.02 4.05 14 22 H 0.18 4.66 8.06 -2.91 -0.02 4.64 14 23 H 0.15 6.28 8.06 -2.91 -0.02 6.25 14 Total: -1.00 -61.60 211.01 3.30 -58.30 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.41 Total: 24.52 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 3.76 Total: -30.58 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -2.89 Total: -93.75 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -61.60 3.30 -58.30 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085210507.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.585 kcal (2) G-P(sol) polarization free energy of solvation -61.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds