Wall clock time and date at job start Mon Mar 30 2020 01:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47312 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46948 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.46809 * 239.99811 * 8 6 4 12 12 S 1.81404 * 109.46946 * 239.99936 * 2 1 3 13 13 C 1.81396 * 103.00129 * 64.99967 * 12 2 1 14 14 C 1.54030 * 113.82016 * 271.19116 * 13 12 2 15 15 O 1.44174 * 85.51893 * 223.19456 * 14 13 12 16 16 C 1.44173 * 93.33982 * 24.19182 * 15 14 13 17 17 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 18 18 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 19 19 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 20 20 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 21 21 H 1.09010 * 112.99540 * 43.17357 * 13 12 2 22 22 H 1.09004 * 113.86168 * 337.34002 * 14 13 12 23 23 H 1.08999 * 113.86966 * 109.04428 * 14 13 12 24 24 H 1.09003 * 113.86514 * 221.66256 * 16 15 14 25 25 H 1.08999 * 113.98853 * 89.97192 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1454 -2.2877 3.6038 10 1 3.1467 -0.1874 4.8165 11 1 1.1660 -1.5866 4.8160 12 16 2.1346 -0.8552 -1.4812 13 6 1.5664 0.2152 -2.8309 14 6 0.1556 -0.1280 -3.3451 15 8 0.7138 0.0556 -4.6617 16 6 2.0582 -0.2247 -4.2228 17 1 -0.3634 -1.0276 -0.0005 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 0.7090 1.1614 3.4844 21 1 1.7164 1.2753 -2.6258 22 1 -0.1530 -1.1523 -3.1359 23 1 -0.6019 0.6098 -3.0805 24 1 2.8098 0.4364 -4.6542 25 1 2.3328 -1.2779 -4.2809 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086195192.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:48 Heat of formation + Delta-G solvation = -39.850675 kcal Electronic energy + Delta-G solvation = -9747.638658 eV Core-core repulsion = 7852.843889 eV Total energy + Delta-G solvation = -1894.794769 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.07953 -36.06212 -32.43076 -30.72218 -27.69182 -27.18845 -23.46563 -21.81956 -18.66778 -17.92801 -17.48650 -16.97911 -16.61005 -15.64982 -14.84558 -14.39454 -13.96040 -13.76534 -13.17860 -12.99487 -12.83517 -12.46970 -12.40140 -12.24489 -11.46474 -11.15223 -10.77556 -10.72047 -10.39968 -8.51733 -8.22935 -6.39476 1.00582 1.40144 1.42382 1.54951 1.96327 2.38920 2.65136 3.05845 3.19594 3.94087 4.14056 4.35030 4.51449 4.64813 4.81669 4.86519 4.88497 4.97588 5.04895 5.36123 5.60501 5.78627 6.06784 6.63833 7.28093 8.82042 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.091974 B = 0.010011 C = 0.009400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 304.361793 B = 2796.329957 C = 2977.872992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.107 3.893 3 H 0.013 0.987 4 C -0.530 4.530 5 H 0.054 0.946 6 C 0.024 3.976 7 N -0.912 5.912 8 Si 0.968 3.032 9 H -0.270 1.270 10 H -0.276 1.276 11 H -0.274 1.274 12 S -0.312 6.312 13 C -0.131 4.131 14 C 0.055 3.945 15 O -0.393 6.393 16 C 0.074 3.926 17 H 0.038 0.962 18 H 0.067 0.933 19 H 0.037 0.963 20 H 0.268 0.732 21 H 0.106 0.894 22 H 0.094 0.906 23 H 0.102 0.898 24 H 0.120 0.880 25 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 -1.126 -7.960 8.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.020 4.020 3 H 0.031 0.969 4 C -0.569 4.569 5 H 0.073 0.927 6 C -0.177 4.177 7 N -0.551 5.551 8 Si 0.792 3.208 9 H -0.194 1.194 10 H -0.201 1.201 11 H -0.200 1.200 12 S -0.083 6.083 13 C -0.261 4.261 14 C -0.024 4.024 15 O -0.312 6.312 16 C -0.004 4.004 17 H 0.057 0.943 18 H 0.086 0.914 19 H 0.056 0.944 20 H 0.077 0.923 21 H 0.124 0.876 22 H 0.112 0.888 23 H 0.120 0.880 24 H 0.138 0.862 25 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.254 -1.887 -8.157 8.377 hybrid contribution -0.304 0.923 1.302 1.625 sum -0.051 -0.964 -6.856 6.923 Atomic orbital electron populations 1.21892 0.95674 1.00109 1.00647 1.20598 0.95915 0.95095 0.90427 0.96868 1.20981 1.32462 1.13036 0.90377 0.92732 1.25697 0.94797 0.95611 1.01631 1.69985 1.36796 1.23612 1.24689 0.85355 0.78322 0.78543 0.78573 1.19448 1.20136 1.19951 1.86474 1.77530 1.40197 1.04069 1.26603 1.00134 1.02713 0.96609 1.24408 0.95074 1.02698 0.80184 1.89631 1.21204 1.90631 1.29761 1.23931 0.86400 1.02393 0.87647 0.94308 0.91429 0.94383 0.92305 0.87565 0.88766 0.88006 0.86239 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.84 71.98 0.64 -5.12 15 2 C 0.11 5.41 2.76 29.85 0.08 5.49 15 3 H 0.01 0.73 8.14 -2.39 -0.02 0.71 15 4 C -0.53 -29.27 8.58 25.60 0.22 -29.05 15 5 H 0.05 3.07 7.71 -2.91 -0.02 3.05 15 6 C 0.02 1.29 5.30 84.65 0.45 1.74 15 7 N -0.91 -50.81 11.32 21.45 0.24 -50.57 15 8 Si 0.97 42.82 29.54 68.60 2.03 44.85 15 9 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 10 H -0.28 -11.87 7.11 99.48 0.71 -11.17 15 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 12 S -0.31 -13.12 20.89 -56.49 -1.18 -14.30 15 13 C -0.13 -4.30 4.09 31.29 0.13 -4.17 15 14 C 0.06 1.64 7.73 72.27 0.56 2.20 15 15 O -0.39 -11.73 12.45 -148.98 -1.86 -13.58 15 16 C 0.07 1.97 8.81 72.27 0.64 2.60 15 17 H 0.04 1.77 8.14 -2.39 -0.02 1.75 15 18 H 0.07 3.49 6.07 -2.39 -0.01 3.48 15 19 H 0.04 1.51 6.23 -2.39 -0.01 1.49 15 20 H 0.27 14.01 8.31 -92.71 -0.77 13.24 15 21 H 0.11 3.51 8.14 -2.38 -0.02 3.49 15 22 H 0.09 2.78 8.10 -2.38 -0.02 2.76 15 23 H 0.10 2.78 7.74 -2.39 -0.02 2.77 15 24 H 0.12 2.58 8.14 -2.39 -0.02 2.56 15 25 H 0.09 2.40 8.10 -2.39 -0.02 2.38 15 Total: -1.00 -58.66 226.45 3.11 -55.56 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.16 Total: 4.36 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 2.71 Total: -26.31 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.24 Total: -50.57 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -1.86 Total: -13.58 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -13.12 SS G_CDS: -1.18 Total: -14.30 kcal Total: -58.66 3.11 -55.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086195192.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.705 kcal (2) G-P(sol) polarization free energy of solvation -58.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds