Wall clock time and date at job start Mon Mar 30 2020 01:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47172 * 2 1 4 4 C 1.50698 * 109.46879 * 239.99691 * 2 1 3 5 5 H 1.07991 * 120.00715 * 240.00038 * 4 2 1 6 6 C 1.37883 * 119.99784 * 60.00593 * 4 2 1 7 7 N 1.31519 * 119.99667 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00411 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46871 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47335 * 119.99471 * 8 6 4 11 11 H 1.48497 * 109.47114 * 240.00195 * 8 6 4 12 12 S 1.81402 * 109.46779 * 120.00319 * 2 1 3 13 13 C 1.81395 * 103.00130 * 294.99374 * 12 2 1 14 14 C 1.53365 * 114.56592 * 174.99954 * 13 12 2 15 15 O 1.43355 * 88.44735 * 139.58274 * 14 13 12 16 16 C 1.43354 * 88.31830 * 331.85044 * 15 14 13 17 17 H 1.09006 * 109.46951 * 299.99782 * 1 2 3 18 18 H 1.08995 * 109.47146 * 59.99254 * 1 2 3 19 19 H 1.08996 * 109.47795 * 180.02562 * 1 2 3 20 20 H 0.97002 * 119.99768 * 180.02562 * 7 6 4 21 21 H 1.09000 * 113.56460 * 40.72876 * 13 12 2 22 22 H 1.08998 * 113.39453 * 24.68390 * 14 13 12 23 23 H 1.08999 * 113.39869 * 254.47682 * 14 13 12 24 24 H 1.08996 * 113.39124 * 143.04979 * 16 15 14 25 25 H 1.09001 * 113.39079 * 273.25136 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 3.1482 -2.2857 -3.6039 10 1 1.1676 -1.5865 -4.8165 11 1 3.1471 -0.1857 -4.8160 12 16 2.1346 -0.8552 1.4811 13 6 1.5665 0.2152 2.8309 14 6 1.8387 -0.3331 4.2371 15 8 2.1921 0.9952 4.6442 16 6 2.5922 1.2576 3.2929 17 1 -0.3633 0.5138 0.8901 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3634 -1.0276 0.0005 20 1 0.7082 1.1610 -3.4843 21 1 0.5593 0.6048 2.6836 22 1 2.6730 -1.0335 4.2745 23 1 0.9463 -0.7146 4.7332 24 1 2.3599 2.2697 2.9616 25 1 3.6232 0.9725 3.0837 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086195193.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:50 Heat of formation + Delta-G solvation = -36.970399 kcal Electronic energy + Delta-G solvation = -9705.005232 eV Core-core repulsion = 7810.335361 eV Total energy + Delta-G solvation = -1894.669871 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.50901 -36.06224 -32.42387 -31.00221 -27.38538 -27.26529 -23.33520 -22.11258 -18.71460 -17.90492 -17.43630 -16.90895 -16.66499 -15.66213 -14.89608 -14.65820 -13.92525 -13.66630 -13.36595 -12.93676 -12.83037 -12.49607 -12.30662 -12.12516 -11.55874 -11.21297 -10.89254 -10.69133 -10.40656 -8.51607 -8.22369 -6.39059 0.99487 1.40801 1.43114 1.55544 1.95850 2.39437 2.92076 3.05401 3.10482 3.89818 4.20109 4.30167 4.53682 4.62112 4.72126 4.83054 4.86130 4.90660 4.99177 5.35215 5.60154 5.77419 6.06097 6.64394 7.28535 8.82540 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.085137 B = 0.009790 C = 0.009481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.802090 B = 2859.453747 C = 2952.483113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.106 3.894 3 H 0.018 0.982 4 C -0.529 4.529 5 H 0.056 0.944 6 C 0.024 3.976 7 N -0.913 5.913 8 Si 0.968 3.032 9 H -0.270 1.270 10 H -0.275 1.275 11 H -0.276 1.276 12 S -0.297 6.297 13 C -0.138 4.138 14 C 0.067 3.933 15 O -0.380 6.380 16 C 0.046 3.954 17 H 0.032 0.968 18 H 0.069 0.931 19 H 0.037 0.963 20 H 0.268 0.732 21 H 0.114 0.886 22 H 0.095 0.905 23 H 0.114 0.886 24 H 0.094 0.906 25 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.717 -0.943 7.797 7.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.021 4.021 3 H 0.036 0.964 4 C -0.568 4.568 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.551 5.551 8 Si 0.792 3.208 9 H -0.194 1.194 10 H -0.200 1.200 11 H -0.201 1.201 12 S -0.067 6.067 13 C -0.267 4.267 14 C -0.010 4.010 15 O -0.300 6.300 16 C -0.034 4.034 17 H 0.051 0.949 18 H 0.088 0.912 19 H 0.056 0.944 20 H 0.077 0.923 21 H 0.132 0.868 22 H 0.113 0.887 23 H 0.132 0.868 24 H 0.112 0.888 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.214 -1.636 7.999 8.254 hybrid contribution -0.542 0.832 -1.216 1.570 sum 0.671 -0.804 6.783 6.863 Atomic orbital electron populations 1.21881 0.96148 1.00055 1.00469 1.20584 0.95608 0.95488 0.90467 0.96371 1.20970 1.32469 1.13041 0.90297 0.92625 1.25696 0.94790 0.95600 1.01638 1.69982 1.36765 1.23655 1.24702 0.85353 0.78298 0.78562 0.78567 1.19391 1.20042 1.20118 1.86395 1.75738 1.41088 1.03462 1.26088 1.03251 1.00352 0.96990 1.23576 1.02226 0.86300 0.88927 1.89830 1.84713 1.27452 1.28001 1.24079 0.98533 1.00185 0.80562 0.94882 0.91203 0.94389 0.92303 0.86803 0.88735 0.86834 0.88772 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.94 8.88 71.98 0.64 -5.31 15 2 C 0.11 5.33 2.76 29.85 0.08 5.41 15 3 H 0.02 0.99 8.14 -2.39 -0.02 0.97 15 4 C -0.53 -29.03 8.58 25.60 0.22 -28.82 15 5 H 0.06 3.10 7.71 -2.92 -0.02 3.08 15 6 C 0.02 1.29 5.30 84.66 0.45 1.74 15 7 N -0.91 -50.68 11.32 21.45 0.24 -50.44 15 8 Si 0.97 42.63 29.54 68.60 2.03 44.66 15 9 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 12 S -0.30 -12.36 20.97 -56.49 -1.18 -13.54 15 13 C -0.14 -4.50 4.61 30.84 0.14 -4.36 15 14 C 0.07 1.80 8.37 63.84 0.53 2.33 15 15 O -0.38 -11.40 12.74 -148.98 -1.90 -13.30 15 16 C 0.05 1.36 8.37 63.84 0.53 1.90 15 17 H 0.03 1.35 6.71 -2.38 -0.02 1.34 15 18 H 0.07 3.64 6.07 -2.39 -0.01 3.62 15 19 H 0.04 1.76 8.14 -2.39 -0.02 1.74 15 20 H 0.27 13.98 8.31 -92.71 -0.77 13.21 15 21 H 0.11 3.74 6.79 -2.39 -0.02 3.73 15 22 H 0.09 2.39 8.11 -2.39 -0.02 2.37 15 23 H 0.11 2.50 8.14 -2.39 -0.02 2.48 15 24 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 25 H 0.10 2.78 8.11 -2.39 -0.02 2.76 15 Total: -1.00 -57.90 227.13 2.95 -54.95 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 1.16 Total: 4.77 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 2.60 Total: -27.10 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.24 Total: -50.44 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -1.90 Total: -13.30 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: -12.36 SS G_CDS: -1.18 Total: -13.54 kcal Total: -57.90 2.95 -54.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086195193.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.975 kcal (2) G-P(sol) polarization free energy of solvation -57.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds