Wall clock time and date at job start Mon Mar 30 2020 02:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86801 * 119.99994 * 2 1 4 4 H 1.48503 * 109.47007 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47498 * 299.99964 * 3 2 1 6 6 H 1.48502 * 109.47055 * 60.00260 * 3 2 1 7 7 C 1.39664 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99798 * 163.20393 * 7 2 1 9 9 C 1.41246 * 120.00211 * 343.20588 * 7 2 1 10 10 C 1.46733 * 120.84615 * 336.46388 * 9 7 2 11 11 N 1.30671 * 119.49129 * 179.72775 * 10 9 7 12 12 C 1.34270 * 121.43031 * 0.24273 * 11 10 9 13 13 C 1.38137 * 132.22855 * 180.02562 * 12 11 10 14 14 N 1.33539 * 107.79513 * 180.02562 * 13 12 11 15 15 C 1.30694 * 109.89701 * 0.02562 * 14 13 12 16 16 N 1.36190 * 109.07503 * 359.97438 * 15 14 13 17 17 C 1.36256 * 132.43538 * 179.97438 * 16 15 14 18 18 H 0.97004 * 119.99879 * 359.97438 * 1 2 3 19 19 H 1.08000 * 120.25442 * 359.97438 * 10 9 7 20 20 H 1.07994 * 126.10058 * 0.02562 * 13 12 11 21 21 H 1.07996 * 125.45936 * 180.02562 * 15 14 13 22 22 H 1.08001 * 120.66682 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 3.7042 1.3464 0.0006 5 1 1.8855 2.3965 -1.2125 6 1 1.8855 2.3964 1.2125 7 6 2.0085 -1.2095 -0.0005 8 1 3.0540 -1.2294 -0.2708 9 6 1.3474 -2.4068 0.3523 10 6 0.1423 -2.3824 1.1891 11 7 -0.4512 -3.5056 1.4951 12 6 0.0202 -4.6867 1.0643 13 6 -0.4180 -5.9839 1.2473 14 7 0.4219 -6.7939 0.5979 15 6 1.3595 -6.0910 0.0192 16 7 1.1518 -4.7707 0.2811 17 6 1.8282 -3.6443 -0.0798 18 1 -0.4850 0.8401 0.0004 19 1 -0.2534 -1.4430 1.5459 20 1 -1.2851 -6.2885 1.8144 21 1 2.1688 -6.4927 -0.5725 22 1 2.7151 -3.7070 -0.6930 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089210699.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:19 Heat of formation + Delta-G solvation = 63.860191 kcal Electronic energy + Delta-G solvation = -10853.810142 eV Core-core repulsion = 8794.935503 eV Total energy + Delta-G solvation = -2058.874639 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.19230 -38.63041 -35.83882 -34.71429 -31.98281 -29.40064 -27.29472 -24.84345 -23.40098 -22.30258 -19.78669 -18.49442 -17.66062 -17.18630 -16.61096 -16.26779 -15.04009 -14.71708 -14.07042 -13.87164 -13.39362 -13.21875 -13.04052 -12.80105 -12.09648 -11.97405 -11.36670 -11.15568 -10.54010 -9.93342 -8.98154 -8.48358 -6.58782 0.19557 0.58826 1.43244 1.49872 1.60783 2.10744 2.20325 2.22326 2.52496 3.24879 3.50935 3.89285 4.07305 4.20363 4.44943 4.74752 5.01612 5.04032 5.33227 5.64463 5.83447 6.06331 6.17165 6.55904 6.68132 6.97528 7.28247 8.06329 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.090609 B = 0.010766 C = 0.009841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.946759 B = 2600.259521 C = 2844.601911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.039 3.961 3 Si 1.000 3.000 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.441 4.441 8 H 0.102 0.898 9 C 0.030 3.970 10 C 0.160 3.840 11 N -0.481 5.481 12 C 0.086 3.914 13 C -0.045 4.045 14 N -0.480 5.480 15 C 0.082 3.918 16 N -0.345 5.345 17 C -0.180 4.180 18 H 0.304 0.696 19 H 0.178 0.822 20 H 0.188 0.812 21 H 0.232 0.768 22 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 3.264 -0.359 4.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.180 4.180 3 Si 0.819 3.181 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.470 4.470 8 H 0.120 0.880 9 C 0.023 3.977 10 C -0.031 4.031 11 N -0.191 5.191 12 C -0.136 4.136 13 C -0.203 4.203 14 N -0.196 5.196 15 C -0.190 4.190 16 N -0.014 5.014 17 C -0.307 4.307 18 H 0.115 0.885 19 H 0.195 0.805 20 H 0.205 0.795 21 H 0.248 0.752 22 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.715 2.217 -0.024 3.505 hybrid contribution 0.860 1.450 -0.548 1.773 sum 3.574 3.668 -0.571 5.153 Atomic orbital electron populations 1.69795 1.09245 1.32516 1.31977 1.26969 0.95587 1.05179 0.90256 0.84861 0.79325 0.74664 0.79255 1.17640 1.18989 1.18433 1.19725 0.98680 0.90275 1.38364 0.88037 1.19556 0.92783 0.93201 0.92150 1.25232 0.91712 0.94776 0.91374 1.67776 1.30830 0.97043 1.23439 1.20949 0.92636 0.95557 1.04451 1.22241 1.03867 0.85384 1.08835 1.69805 1.04560 1.33434 1.11765 1.25172 1.05339 0.77363 1.11175 1.43267 1.18831 1.08209 1.31137 1.21932 1.07711 0.83264 1.17755 0.88452 0.80517 0.79501 0.75175 0.82075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -35.75 10.87 21.78 0.24 -35.51 14 2 C 0.04 1.61 5.21 85.16 0.44 2.05 14 3 Si 1.00 31.23 29.59 68.60 2.03 33.26 14 4 H -0.25 -7.72 7.11 99.48 0.71 -7.02 14 5 H -0.27 -8.08 7.11 99.48 0.71 -7.37 14 6 H -0.26 -7.83 7.11 99.48 0.71 -7.12 14 7 C -0.44 -20.05 9.08 23.35 0.21 -19.84 14 8 H 0.10 4.29 7.90 -2.91 -0.02 4.27 14 9 C 0.03 1.46 5.71 -19.99 -0.11 1.34 14 10 C 0.16 7.99 10.14 87.09 0.88 8.88 14 11 N -0.48 -24.59 10.43 -187.07 -1.95 -26.54 14 12 C 0.09 4.31 7.87 132.64 1.04 5.35 14 13 C -0.04 -2.04 12.00 84.41 1.01 -1.03 14 14 N -0.48 -21.33 11.19 -197.11 -2.21 -23.54 14 15 C 0.08 3.47 12.78 179.84 2.30 5.77 14 16 N -0.35 -16.51 2.94 -352.87 -1.04 -17.54 14 17 C -0.18 -8.49 10.91 84.34 0.92 -7.57 14 18 H 0.30 11.81 8.30 -92.71 -0.77 11.04 14 19 H 0.18 8.51 6.26 -2.91 -0.02 8.49 14 20 H 0.19 7.42 8.06 -2.91 -0.02 7.40 14 21 H 0.23 7.48 8.06 -2.91 -0.02 7.45 14 22 H 0.16 6.70 8.06 -2.91 -0.02 6.68 14 Total: -1.00 -56.11 206.67 5.01 -51.09 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 1.24 Total: 23.82 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 6.70 Total: -5.04 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -4.96 Total: -103.14 kcal Atomic # 14 Polarization: 31.23 SS G_CDS: 2.03 Total: 33.26 kcal Total: -56.11 5.01 -51.09 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089210699.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.955 kcal (2) G-P(sol) polarization free energy of solvation -56.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds