Wall clock time and date at job start Mon Mar 30 2020 02:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30656 * 1 3 3 Si 1.86797 * 120.00024 * 2 1 4 4 H 1.48503 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47131 * 299.99328 * 3 2 1 6 6 H 1.48499 * 109.47437 * 59.99718 * 3 2 1 7 7 C 1.40212 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99528 * 180.02562 * 7 2 1 9 9 C 1.40534 * 120.00177 * 359.97438 * 7 2 1 10 10 N 1.33818 * 120.44665 * 0.02562 * 9 7 2 11 11 C 1.31485 * 122.05417 * 179.97438 * 10 9 7 12 12 C 1.38424 * 122.39835 * 359.97438 * 11 10 9 13 13 C 1.39324 * 119.80723 * 0.02562 * 12 11 10 14 14 N 1.36715 * 134.99437 * 180.02562 * 13 12 11 15 15 H 0.97000 * 126.01160 * 0.02596 * 14 13 12 16 16 N 1.40135 * 107.97945 * 179.97438 * 14 13 12 17 17 C 1.30663 * 109.63970 * 359.97438 * 16 14 13 18 18 C 1.40339 * 108.70347 * 0.24785 * 17 16 14 19 19 H 0.97005 * 119.99985 * 0.02562 * 1 2 3 20 20 H 1.08004 * 118.80252 * 179.97438 * 11 10 9 21 21 H 1.08009 * 120.09882 * 180.02562 * 12 11 10 22 22 H 1.08002 * 125.64605 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7006 1.3464 0.0006 5 1 1.8819 2.3964 -1.2126 6 1 1.8818 2.3965 1.2124 7 6 2.0076 -1.2143 0.0005 8 1 3.0876 -1.2142 0.0010 9 6 1.3049 -2.4314 0.0016 10 7 -0.0332 -2.4418 0.0016 11 6 -0.7223 -3.5616 0.0021 12 6 -0.1156 -4.8058 0.0022 13 6 1.2745 -4.8985 0.0022 14 7 2.1747 -5.9274 0.0018 15 1 1.9597 -6.8733 0.0010 16 7 3.4627 -5.3753 0.0015 17 6 3.3815 -4.0712 0.0012 18 6 2.0269 -3.7046 0.0070 19 1 -0.4850 0.8401 -0.0004 20 1 -1.8011 -3.5087 0.0025 21 1 -0.7182 -5.7022 0.0022 22 1 4.2184 -3.3885 0.0013 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089220053.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:32 Heat of formation + Delta-G solvation = 66.384578 kcal Electronic energy + Delta-G solvation = -10880.999488 eV Core-core repulsion = 8822.234314 eV Total energy + Delta-G solvation = -2058.765174 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.74220 -38.30123 -35.57883 -32.99690 -30.96735 -30.68525 -27.61856 -23.79474 -23.17318 -22.05617 -19.71276 -18.31694 -17.12838 -16.61412 -15.81940 -15.47506 -15.16555 -14.67693 -14.23238 -13.46013 -13.21473 -12.75325 -12.74132 -12.18220 -11.66809 -11.65708 -11.37401 -10.78721 -9.57482 -9.49687 -9.01679 -8.42237 -6.61119 0.43474 1.27207 1.46465 1.59999 1.63388 1.94045 2.13767 2.22140 2.79382 3.90306 4.04448 4.23015 4.41814 4.65492 4.81598 5.06618 5.11021 5.23549 5.57832 5.82830 5.99244 6.18623 6.53745 6.70879 6.85386 7.03248 8.18798 8.33077 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.052934 B = 0.013589 C = 0.010854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.830857 B = 2060.050418 C = 2579.038352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.019 3.981 3 Si 0.996 3.004 4 H -0.246 1.246 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.408 4.408 8 H 0.106 0.894 9 C 0.273 3.727 10 N -0.560 5.560 11 C 0.164 3.836 12 C -0.370 4.370 13 C 0.172 3.828 14 N -0.511 5.511 15 H 0.441 0.559 16 N -0.333 5.333 17 C 0.098 3.902 18 C -0.342 4.342 19 H 0.288 0.712 20 H 0.146 0.854 21 H 0.121 0.879 22 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 0.146 -0.009 2.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.207 4.207 3 Si 0.815 3.185 4 H -0.169 1.169 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.438 4.438 8 H 0.124 0.876 9 C 0.146 3.854 10 N -0.277 5.277 11 C -0.001 4.001 12 C -0.400 4.400 13 C 0.049 3.951 14 N -0.227 5.227 15 H 0.286 0.714 16 N -0.151 5.151 17 C -0.093 4.093 18 C -0.355 4.355 19 H 0.099 0.901 20 H 0.164 0.836 21 H 0.139 0.861 22 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.419 0.042 -0.009 2.419 hybrid contribution -0.321 -0.315 0.000 0.450 sum 2.098 -0.273 -0.009 2.115 Atomic orbital electron populations 1.70184 1.09359 1.30248 1.24667 1.27255 0.95803 1.05049 0.92561 0.84935 0.79702 0.74905 0.78952 1.16913 1.18945 1.18959 1.20210 0.95895 0.89824 1.37901 0.87567 1.19718 0.88279 0.90449 0.86980 1.68775 1.06764 1.27338 1.24796 1.22686 0.99849 0.87867 0.89710 1.20328 0.89995 0.99061 1.30605 1.19013 0.92803 0.88460 0.94821 1.45801 1.02005 1.07388 1.67468 0.71380 1.76692 1.00521 1.10191 1.27662 1.23686 0.96517 0.92403 0.96682 1.20952 0.94023 0.95174 1.25312 0.90053 0.83641 0.86102 0.78214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.37 11.49 21.87 0.25 -36.11 14 2 C 0.02 0.90 5.50 85.35 0.47 1.37 14 3 Si 1.00 34.19 29.56 68.60 2.03 36.22 14 4 H -0.25 -7.98 7.11 99.48 0.71 -7.27 14 5 H -0.26 -8.80 7.11 99.48 0.71 -8.10 14 6 H -0.26 -8.81 7.11 99.48 0.71 -8.10 14 7 C -0.41 -20.57 9.13 23.31 0.21 -20.35 14 8 H 0.11 4.81 7.79 -2.91 -0.02 4.79 14 9 C 0.27 14.83 6.72 41.52 0.28 15.11 14 10 N -0.56 -30.76 7.89 -185.03 -1.46 -32.22 14 11 C 0.16 7.90 11.09 84.79 0.94 8.84 14 12 C -0.37 -16.79 10.11 22.58 0.23 -16.56 14 13 C 0.17 8.16 7.40 39.35 0.29 8.45 14 14 N -0.51 -21.03 7.43 -51.51 -0.38 -21.41 14 15 H 0.44 14.49 8.96 -213.30 -1.91 12.57 14 16 N -0.33 -14.22 12.60 -56.80 -0.72 -14.93 14 17 C 0.10 4.29 11.88 85.38 1.01 5.30 14 18 C -0.34 -17.27 6.22 -19.94 -0.12 -17.39 14 19 H 0.29 12.78 8.29 -92.70 -0.77 12.01 14 20 H 0.15 6.04 8.06 -2.91 -0.02 6.02 14 21 H 0.12 4.66 8.06 -2.91 -0.02 4.64 14 22 H 0.20 7.27 8.06 -2.91 -0.02 7.25 14 Total: -1.00 -62.28 207.56 2.38 -59.90 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -0.65 Total: 23.81 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 3.31 Total: -15.24 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -2.31 Total: -104.69 kcal Atomic # 14 Polarization: 34.19 SS G_CDS: 2.03 Total: 36.22 kcal Total: -62.28 2.38 -59.90 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089220053.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.283 kcal (2) G-P(sol) polarization free energy of solvation -62.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds