Wall clock time and date at job start Mon Mar 30 2020 01:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86792 * 120.00165 * 2 1 4 4 H 1.48502 * 109.47175 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47497 * 300.00101 * 3 2 1 6 6 H 1.48502 * 109.47041 * 60.00228 * 3 2 1 7 7 C 1.39908 * 119.99400 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00207 * 162.94258 * 7 2 1 9 9 C 1.41078 * 120.00424 * 342.93841 * 7 2 1 10 10 C 1.41236 * 120.46673 * 155.55896 * 9 7 2 11 11 N 1.30879 * 120.95692 * 180.02562 * 10 9 7 12 12 C 1.33616 * 121.81963 * 0.05127 * 11 10 9 13 13 C 1.41610 * 132.98331 * 179.97438 * 12 11 10 14 14 C 1.34752 * 108.01130 * 179.97438 * 13 12 11 15 15 N 1.36539 * 109.71769 * 0.02562 * 14 13 12 16 16 H 0.96998 * 125.63175 * 180.02562 * 15 14 13 17 17 C 1.38024 * 108.75128 * 359.97438 * 15 14 13 18 18 C 1.38330 * 133.44952 * 179.97438 * 17 15 14 19 19 H 0.97007 * 119.99773 * 0.02562 * 1 2 3 20 20 H 1.08000 * 119.52267 * 0.03119 * 10 9 7 21 21 H 1.07999 * 125.99470 * 359.97438 * 13 12 11 22 22 H 1.08005 * 125.14590 * 180.26611 * 14 13 12 23 23 H 1.07995 * 120.94637 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.7027 1.3463 -0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3963 1.2125 7 6 2.0081 -1.2117 -0.0005 8 1 3.0525 -1.2323 -0.2749 9 6 1.3492 -2.4067 0.3574 10 6 1.8255 -3.6533 -0.1053 11 7 1.2214 -4.7677 0.2203 12 6 0.1350 -4.7789 0.9981 13 6 -0.6903 -5.8197 1.4889 14 6 -1.6611 -5.2629 2.2394 15 7 -1.5067 -3.9064 2.2599 16 1 -2.0779 -3.2797 2.7308 17 6 -0.4030 -3.5740 1.5007 18 6 0.2048 -2.3734 1.1804 19 1 -0.4850 0.8401 -0.0004 20 1 2.7008 -3.6874 -0.7370 21 1 -0.5639 -6.8747 1.2956 22 1 -2.4410 -5.8075 2.7510 23 1 -0.1856 -1.4371 1.5508 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089221020.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:00 Heat of formation + Delta-G solvation = 33.614475 kcal Electronic energy + Delta-G solvation = -10735.405115 eV Core-core repulsion = 8740.644834 eV Total energy + Delta-G solvation = -1994.760281 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.89711 -38.34840 -35.77834 -32.79530 -30.61153 -30.48539 -26.88803 -24.03335 -22.73064 -21.32191 -19.22357 -18.51617 -17.16110 -16.68570 -16.13303 -15.35512 -15.06284 -14.18632 -13.80116 -13.56853 -13.32645 -13.06138 -12.88020 -12.66949 -12.29287 -11.86541 -11.23349 -10.50167 -9.94234 -9.06287 -8.74010 -8.62714 -6.31956 0.64843 0.98157 1.40803 1.47586 1.56786 2.10828 2.21274 2.56356 2.81936 3.73662 3.95128 4.39228 4.54524 4.75169 4.89729 4.98416 5.17864 5.28669 5.50172 5.76510 5.85707 6.10855 6.17972 6.60329 6.79609 6.82396 7.03957 7.66432 8.29023 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.069577 B = 0.011674 C = 0.010254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.337250 B = 2397.814503 C = 2729.988251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.033 3.967 3 Si 0.988 3.012 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.476 4.476 8 H 0.090 0.910 9 C 0.044 3.956 10 C 0.008 3.992 11 N -0.472 5.472 12 C -0.045 4.045 13 C -0.215 4.215 14 C 0.046 3.954 15 N -0.594 5.594 16 H 0.422 0.578 17 C 0.062 3.938 18 C -0.200 4.200 19 H 0.289 0.711 20 H 0.147 0.853 21 H 0.149 0.851 22 H 0.217 0.783 23 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.958 -0.557 4.153 5.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.182 4.182 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.506 4.506 8 H 0.108 0.892 9 C 0.038 3.962 10 C -0.164 4.164 11 N -0.180 5.180 12 C -0.174 4.174 13 C -0.241 4.241 14 C -0.081 4.081 15 N -0.200 5.200 16 H 0.261 0.739 17 C -0.046 4.046 18 C -0.231 4.231 19 H 0.100 0.900 20 H 0.164 0.836 21 H 0.167 0.833 22 H 0.234 0.766 23 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.003 -1.231 3.940 5.105 hybrid contribution -0.244 1.796 0.265 1.832 sum -3.247 0.565 4.205 5.343 Atomic orbital electron populations 1.69905 1.09246 1.30652 1.34986 1.26843 0.95499 1.04749 0.91101 0.85059 0.79579 0.75659 0.78833 1.17699 1.19090 1.19046 1.19759 0.98430 0.91580 1.40821 0.89236 1.18542 0.92684 0.94321 0.90641 1.22925 1.02101 0.87822 1.03516 1.66673 1.07841 1.31564 1.11928 1.19251 0.98162 0.93819 1.06122 1.20589 0.98593 0.98180 1.06742 1.22346 1.01424 0.81966 1.02364 1.41658 1.25132 1.07928 1.45332 0.73927 1.19312 0.91323 0.96385 0.97589 1.20408 1.02211 0.94198 1.06234 0.90015 0.83588 0.83341 0.76614 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.30 10.93 21.82 0.24 -42.06 14 2 C 0.03 1.64 5.17 85.24 0.44 2.09 14 3 Si 0.99 36.96 29.59 68.60 2.03 38.99 14 4 H -0.25 -9.20 7.11 99.48 0.71 -8.50 14 5 H -0.27 -9.55 7.11 99.48 0.71 -8.85 14 6 H -0.27 -9.58 7.11 99.48 0.71 -8.87 14 7 C -0.48 -25.22 9.06 23.37 0.21 -25.01 14 8 H 0.09 4.46 7.90 -2.91 -0.02 4.43 14 9 C 0.04 2.43 5.59 -21.17 -0.12 2.31 14 10 C 0.01 0.42 10.94 85.57 0.94 1.36 14 11 N -0.47 -25.27 10.39 -186.83 -1.94 -27.21 14 12 C -0.04 -2.26 7.32 40.43 0.30 -1.97 14 13 C -0.21 -8.55 10.84 22.30 0.24 -8.31 14 14 C 0.05 1.47 11.83 83.16 0.98 2.46 14 15 N -0.59 -22.10 6.15 -187.39 -1.15 -23.25 14 16 H 0.42 12.68 8.96 -92.71 -0.83 11.85 14 17 C 0.06 3.09 7.26 38.92 0.28 3.37 14 18 C -0.20 -10.86 8.80 22.97 0.20 -10.66 14 19 H 0.29 13.31 8.30 -92.70 -0.77 12.54 14 20 H 0.15 7.02 8.06 -2.91 -0.02 6.99 14 21 H 0.15 5.15 8.06 -2.91 -0.02 5.12 14 22 H 0.22 4.16 8.06 -2.91 -0.02 4.14 14 23 H 0.11 6.22 6.21 -2.91 -0.02 6.20 14 Total: -1.00 -65.89 210.73 3.06 -62.83 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.41 Total: 25.07 kcal Atomic # 6 Polarization: -37.84 SS G_CDS: 3.48 Total: -34.36 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -2.85 Total: -92.52 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Total: -65.89 3.06 -62.83 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089221020.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.441 kcal (2) G-P(sol) polarization free energy of solvation -65.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds