Wall clock time and date at job start Mon Mar 30 2020 01:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30718 * 1 3 3 Si 1.86800 * 119.99799 * 2 1 4 4 H 1.48499 * 109.47370 * 239.99851 * 3 2 1 5 5 H 1.48506 * 109.47181 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47487 * 119.99701 * 3 2 1 7 7 C 1.40117 * 120.00551 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00351 * 163.17976 * 7 2 1 9 9 C 1.41077 * 119.99562 * 343.17818 * 7 2 1 10 10 C 1.41062 * 121.12555 * 336.05568 * 9 7 2 11 11 C 1.37928 * 119.33717 * 179.97438 * 10 9 7 12 12 N 1.31806 * 121.60757 * 359.55146 * 11 10 9 13 13 C 1.33038 * 122.04373 * 0.73576 * 12 11 10 14 14 C 1.46528 * 133.68293 * 179.16850 * 13 12 11 15 15 C 1.34374 * 106.94216 * 180.02562 * 14 13 12 16 16 N 1.36686 * 109.84217 * 0.02562 * 15 14 13 17 17 H 0.97004 * 125.03198 * 180.02562 * 16 15 14 18 18 C 1.36839 * 109.92467 * 0.26520 * 16 15 14 19 19 H 0.96999 * 120.00467 * 0.02562 * 1 2 3 20 20 H 1.08004 * 120.33290 * 359.96047 * 10 9 7 21 21 H 1.07997 * 119.19992 * 180.02562 * 11 10 9 22 22 H 1.08002 * 126.52876 * 0.03872 * 14 13 12 23 23 H 1.08004 * 125.07711 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 3.0949 1.6965 -1.2125 5 1 1.2761 2.7465 -0.0006 6 1 3.0949 1.6966 1.2125 7 6 2.0079 -1.2134 0.0005 8 1 3.0532 -1.2335 -0.2701 9 6 1.3478 -2.4089 0.3547 10 6 0.1941 -2.3919 1.1662 11 6 -0.4223 -3.5827 1.4894 12 7 0.0352 -4.7386 1.0512 13 6 1.1210 -4.8241 0.2873 14 6 1.8483 -5.9440 -0.3161 15 6 2.8844 -5.4194 -0.9920 16 7 2.8774 -4.0581 -0.8685 17 1 3.5269 -3.4593 -1.2691 18 6 1.8214 -3.6658 -0.0916 19 1 -0.4851 0.8400 -0.0004 20 1 -0.2025 -1.4559 1.5310 21 1 -1.3056 -3.5672 2.1105 22 1 1.5989 -6.9916 -0.2334 23 1 3.6142 -5.9884 -1.5489 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089221129.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:02 Heat of formation + Delta-G solvation = 31.798469 kcal Electronic energy + Delta-G solvation = -10810.444532 eV Core-core repulsion = 8815.605503 eV Total energy + Delta-G solvation = -1994.839029 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.74796 -38.12244 -36.01198 -32.83269 -30.56762 -29.57308 -27.74095 -23.57367 -22.84508 -21.32897 -19.27515 -18.38805 -17.14439 -16.73869 -15.92494 -15.28820 -15.09576 -14.32549 -13.85328 -13.39237 -13.30887 -13.10268 -12.88100 -12.69432 -12.15388 -11.95680 -11.30476 -10.37068 -9.74401 -8.99288 -8.70251 -8.66746 -6.46956 0.71674 1.09177 1.36883 1.45756 1.50760 2.06844 2.16265 2.64997 2.83185 3.75141 3.88457 4.43605 4.58253 4.65087 4.91053 5.04326 5.14396 5.37991 5.49460 5.75114 5.75586 6.15269 6.22904 6.58930 6.71090 6.83700 7.05440 7.84859 8.22812 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.052047 B = 0.013689 C = 0.011139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.841561 B = 2044.880155 C = 2513.027295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.038 3.962 3 Si 0.990 3.010 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.483 4.483 8 H 0.085 0.915 9 C 0.112 3.888 10 C -0.269 4.269 11 C 0.095 3.905 12 N -0.580 5.580 13 C 0.061 3.939 14 C -0.249 4.249 15 C 0.072 3.928 16 N -0.572 5.572 17 H 0.419 0.581 18 C -0.059 4.059 19 H 0.294 0.706 20 H 0.118 0.882 21 H 0.144 0.856 22 H 0.154 0.846 23 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.273 -0.370 -2.559 6.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.180 4.180 3 Si 0.810 3.190 4 H -0.179 1.179 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.514 4.514 8 H 0.103 0.897 9 C 0.102 3.898 10 C -0.295 4.295 11 C -0.065 4.065 12 N -0.296 5.296 13 C -0.069 4.069 14 C -0.276 4.276 15 C -0.058 4.058 16 N -0.174 5.174 17 H 0.256 0.744 18 C -0.168 4.168 19 H 0.105 0.895 20 H 0.136 0.864 21 H 0.161 0.839 22 H 0.172 0.828 23 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 5.724 -0.979 -2.430 6.295 hybrid contribution 0.510 1.761 -0.222 1.846 sum 6.234 0.782 -2.652 6.820 Atomic orbital electron populations 1.69825 1.09348 1.31266 1.32857 1.26869 0.95500 1.04735 0.90931 0.85127 0.78693 0.74967 0.80198 1.17936 1.19105 1.18448 1.19683 0.98030 0.91837 1.41823 0.89717 1.17399 0.92453 0.90127 0.89779 1.21760 1.02401 0.98175 1.07142 1.22249 0.98502 0.87994 0.97746 1.66924 1.15739 1.28708 1.18231 1.20510 0.93760 0.93723 0.98859 1.21625 0.99820 0.97368 1.08798 1.22427 1.00177 0.82042 1.01180 1.41263 1.24741 1.07342 1.44095 0.74381 1.19549 0.96076 0.96335 1.04816 0.89541 0.86405 0.83880 0.82836 0.76224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.14 10.93 21.85 0.24 -40.90 14 2 C 0.04 1.82 5.20 85.31 0.44 2.26 14 3 Si 0.99 35.90 29.59 68.60 2.03 37.93 14 4 H -0.26 -8.79 7.11 99.48 0.71 -8.09 14 5 H -0.27 -9.20 7.11 99.48 0.71 -8.49 14 6 H -0.26 -9.29 7.11 99.48 0.71 -8.59 14 7 C -0.48 -24.98 9.11 23.42 0.21 -24.76 14 8 H 0.08 4.03 7.90 -2.91 -0.02 4.01 14 9 C 0.11 6.18 5.61 -21.08 -0.12 6.06 14 10 C -0.27 -14.91 8.79 22.89 0.20 -14.71 14 11 C 0.10 5.03 11.13 84.62 0.94 5.97 14 12 N -0.58 -31.48 10.39 -185.55 -1.93 -33.41 14 13 C 0.06 3.13 7.52 41.69 0.31 3.45 14 14 C -0.25 -10.03 11.09 23.55 0.26 -9.77 14 15 C 0.07 2.35 11.82 83.05 0.98 3.33 14 16 N -0.57 -22.39 6.03 -186.42 -1.12 -23.52 14 17 H 0.42 13.83 8.96 -92.71 -0.83 13.00 14 18 C -0.06 -3.00 7.06 39.74 0.28 -2.72 14 19 H 0.29 13.39 8.29 -92.71 -0.77 12.62 14 20 H 0.12 6.58 6.20 -2.91 -0.02 6.56 14 21 H 0.14 6.55 8.06 -2.91 -0.02 6.52 14 22 H 0.15 5.35 8.06 -2.91 -0.02 5.33 14 23 H 0.22 4.27 8.06 -2.91 -0.02 4.25 14 Total: -1.00 -66.80 211.10 3.15 -63.65 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.41 Total: 27.12 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 3.52 Total: -30.88 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -2.81 Total: -97.82 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Total: -66.80 3.15 -63.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089221129.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.450 kcal (2) G-P(sol) polarization free energy of solvation -66.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds