Wall clock time and date at job start Mon Mar 30 2020 02:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30398 * 1 3 3 Si 1.86795 * 120.00124 * 2 1 4 4 H 1.48500 * 109.46777 * 269.99930 * 3 2 1 5 5 H 1.48498 * 109.47240 * 29.99716 * 3 2 1 6 6 H 1.48500 * 109.47469 * 150.00159 * 3 2 1 7 7 C 1.40805 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99886 * 179.97438 * 7 2 1 9 9 C 1.38448 * 120.00564 * 0.02562 * 7 2 1 10 10 O 1.35415 * 127.75848 * 359.97429 * 9 7 2 11 11 N 1.20845 * 113.51388 * 180.02562 * 10 9 7 12 12 C 1.31485 * 114.20638 * 359.97438 * 11 10 9 13 13 C 1.41035 * 136.35635 * 179.97438 * 12 11 10 14 14 C 1.36129 * 119.55330 * 180.02562 * 13 12 11 15 15 C 1.39205 * 121.89609 * 359.97438 * 14 13 12 16 16 C 1.37986 * 121.33147 * 359.97267 * 15 14 13 17 17 C 1.38533 * 119.32972 * 0.06858 * 16 15 14 18 18 H 0.96998 * 119.99763 * 359.97438 * 1 2 3 19 19 H 1.07999 * 120.22026 * 0.04109 * 13 12 11 20 20 H 1.08001 * 119.05072 * 179.97438 * 14 13 12 21 21 H 1.08000 * 119.33524 * 179.97438 * 15 14 13 22 22 H 1.07997 * 120.33415 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3040 0.0000 0.0000 3 14 2.2380 1.6177 0.0000 4 1 2.4855 2.0463 -1.4001 5 1 1.4355 2.6526 0.7000 6 1 3.5356 1.4402 0.7000 7 6 2.0079 -1.2195 0.0005 8 1 3.0879 -1.2195 0.0001 9 6 1.3157 -2.4185 0.0005 10 8 -0.0260 -2.6013 0.0005 11 7 -0.3541 -3.7644 0.0010 12 6 0.6537 -4.6088 0.0009 13 6 0.8108 -6.0104 0.0018 14 6 2.0624 -6.5457 0.0018 15 6 3.2035 -5.7484 0.0006 16 6 3.1165 -4.3712 -0.0014 17 6 1.8683 -3.7702 -0.0006 18 1 -0.4850 0.8400 0.0004 19 1 -0.0560 -6.6546 0.0021 20 1 2.1733 -7.6200 0.0029 21 1 4.1765 -6.2170 0.0011 22 1 4.0123 -3.7681 -0.0019 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095931586.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:24 Heat of formation + Delta-G solvation = 47.731815 kcal Electronic energy + Delta-G solvation = -10869.258708 eV Core-core repulsion = 8777.391938 eV Total energy + Delta-G solvation = -2091.866769 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.00211 -36.65649 -34.61097 -31.01821 -30.50277 -28.92115 -25.98364 -23.08097 -21.61465 -19.93511 -17.88036 -16.30667 -15.83938 -15.33308 -14.79162 -14.41826 -13.14332 -12.83931 -12.31724 -11.84741 -11.74052 -11.60676 -11.21310 -10.90800 -10.53803 -10.16476 -10.11390 -8.93777 -8.83264 -7.96987 -7.49109 -7.11369 -4.84698 1.93399 2.65755 2.73905 2.81356 2.97499 3.45102 3.58111 4.57685 5.06777 5.18250 5.45331 5.86130 6.02472 6.28912 6.38435 6.49364 6.64198 6.79722 7.35430 7.45120 7.61756 7.68535 7.78736 7.89274 8.04470 8.23733 9.44807 10.47083 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.066815 B = 0.012016 C = 0.010221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.968222 B = 2329.582230 C = 2738.709071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.720 5.720 2 C 0.055 3.945 3 Si 0.939 3.061 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.364 4.364 8 H 0.118 0.882 9 C 0.170 3.830 10 O 0.066 5.934 11 N -0.480 5.480 12 C 0.088 3.912 13 C -0.172 4.172 14 C -0.060 4.060 15 C -0.266 4.266 16 C 0.013 3.987 17 C -0.316 4.316 18 H 0.302 0.698 19 H 0.103 0.897 20 H 0.101 0.899 21 H 0.099 0.901 22 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.861 1.747 -0.003 5.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.342 5.342 2 C -0.174 4.174 3 Si 0.760 3.240 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.392 4.392 8 H 0.135 0.865 9 C 0.108 3.892 10 O 0.025 5.975 11 N -0.209 5.209 12 C -0.062 4.062 13 C -0.194 4.194 14 C -0.081 4.081 15 C -0.287 4.287 16 C -0.005 4.005 17 C -0.324 4.324 18 H 0.114 0.886 19 H 0.121 0.879 20 H 0.119 0.881 21 H 0.117 0.883 22 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.277 1.826 0.001 3.751 hybrid contribution 1.101 0.506 -0.005 1.212 sum 4.378 2.332 -0.004 4.960 Atomic orbital electron populations 1.69576 1.08228 1.32049 1.24372 1.26578 0.95328 1.03084 0.92437 0.85765 0.80294 0.77757 0.80194 1.18330 1.19143 1.17512 1.19074 0.95781 0.87329 1.37031 0.86468 1.22143 0.83892 0.92616 0.90502 1.85113 1.20672 1.19575 1.72119 1.73326 1.22444 0.89397 1.35724 1.21369 0.89847 0.95206 0.99769 1.19426 0.96536 0.90344 1.13056 1.20208 0.92311 0.97871 0.97743 1.20241 0.96863 0.93012 1.18621 1.19823 0.94059 0.93772 0.92896 1.20834 0.94947 0.91694 1.24893 0.88631 0.87884 0.88080 0.88254 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -16.99 12.09 55.59 0.67 -16.32 14 2 C 0.05 1.21 5.51 -17.19 -0.09 1.12 14 3 Si 0.94 15.65 29.57 -169.99 -5.03 10.62 14 4 H -0.26 -4.24 7.11 56.52 0.40 -3.84 14 5 H -0.27 -4.33 7.11 56.52 0.40 -3.93 14 6 H -0.25 -4.09 7.11 56.52 0.40 -3.68 14 7 C -0.36 -8.74 9.37 -38.53 -0.36 -9.10 14 8 H 0.12 2.51 7.86 -52.49 -0.41 2.10 14 9 C 0.17 4.62 7.11 -36.38 -0.26 4.37 14 10 O 0.07 1.93 9.56 13.32 0.13 2.06 14 11 N -0.48 -14.01 11.96 33.25 0.40 -13.61 14 12 C 0.09 2.41 7.59 -83.13 -0.63 1.77 14 13 C -0.17 -4.08 10.10 -39.28 -0.40 -4.47 14 14 C -0.06 -1.27 9.89 -39.98 -0.40 -1.66 14 15 C -0.27 -5.59 10.00 -39.31 -0.39 -5.99 14 16 C 0.01 0.30 10.09 -39.56 -0.40 -0.09 14 17 C -0.32 -8.37 6.73 -102.85 -0.69 -9.06 14 18 H 0.30 6.17 8.29 -40.82 -0.34 5.83 14 19 H 0.10 2.22 8.06 -52.49 -0.42 1.80 14 20 H 0.10 1.74 8.06 -52.49 -0.42 1.31 14 21 H 0.10 1.77 8.06 -52.49 -0.42 1.34 14 22 H 0.10 2.04 8.06 -52.49 -0.42 1.62 14 LS Contribution 209.24 15.07 3.15 3.15 Total: -1.00 -29.13 209.24 -5.53 -34.66 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -1.24 Total: 2.55 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -3.62 Total: -23.12 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 1.07 Total: -29.93 kcal Atomic # 8 Polarization: 1.93 SS G_CDS: 0.13 Total: 2.06 kcal Atomic # 14 Polarization: 15.65 SS G_CDS: -5.03 Total: 10.62 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -29.13 -5.53 -34.66 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095931586.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.395 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds