Wall clock time and date at job start Mon Mar 30 2020 02:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30804 * 1 3 3 Si 1.86802 * 120.00375 * 2 1 4 4 H 1.48500 * 109.46939 * 274.98350 * 3 2 1 5 5 H 1.48496 * 109.46986 * 34.97787 * 3 2 1 6 6 H 1.48497 * 109.47420 * 154.98104 * 3 2 1 7 7 C 1.39918 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00156 * 186.04443 * 7 2 1 9 9 C 1.41540 * 119.99466 * 6.04661 * 7 2 1 10 10 N 1.34049 * 125.45529 * 354.25185 * 9 7 2 11 11 C 1.32428 * 109.67738 * 180.02562 * 10 9 7 12 12 C 1.40956 * 132.55903 * 179.97438 * 11 10 9 13 13 C 1.36081 * 119.28106 * 179.97438 * 12 11 10 14 14 C 1.40413 * 119.68408 * 0.02562 * 13 12 11 15 15 C 1.35149 * 120.26695 * 0.02562 * 14 13 12 16 16 N 1.36041 * 120.60468 * 359.96377 * 15 14 13 17 17 N 1.33113 * 125.45152 * 174.25466 * 9 7 2 18 18 H 0.97000 * 119.99997 * 359.97438 * 1 2 3 19 19 H 1.07995 * 120.35306 * 0.02562 * 12 11 10 20 20 H 1.08001 * 120.15928 * 180.29335 * 13 12 11 21 21 H 1.07993 * 119.86989 * 179.97438 * 14 13 12 22 22 H 1.07996 * 119.70192 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3843 2.1071 -1.3948 5 1 1.4962 2.6200 0.8026 6 1 3.5884 1.4120 0.5921 7 6 2.0076 -1.2117 0.0005 8 1 3.0831 -1.2143 0.0990 9 6 1.3057 -2.4341 -0.1280 10 7 -0.0281 -2.5665 -0.1474 11 6 -0.3473 -3.8449 -0.2795 12 6 -1.5848 -4.5158 -0.3530 13 6 -1.6008 -5.8694 -0.4922 14 6 -0.3892 -6.5759 -0.5598 15 6 0.7885 -5.9169 -0.4867 16 7 0.8177 -4.5640 -0.3477 17 7 1.8645 -3.6362 -0.2491 18 1 -0.4850 0.8400 0.0004 19 1 -2.5101 -3.9615 -0.3003 20 1 -2.5409 -6.3974 -0.5547 21 1 -0.3984 -7.6501 -0.6698 22 1 1.7149 -6.4694 -0.5392 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107832177.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:12 Heat of formation + Delta-G solvation = 109.611225 kcal Electronic energy + Delta-G solvation = -10821.641043 eV Core-core repulsion = 8764.750317 eV Total energy + Delta-G solvation = -2056.890726 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.82457 -36.59037 -33.44571 -32.13337 -29.77774 -28.30114 -26.36391 -22.57486 -21.78092 -20.40307 -17.20784 -16.40786 -15.89158 -14.93765 -14.67252 -14.57627 -13.78253 -12.90770 -11.86241 -11.65963 -11.46771 -11.33420 -10.94404 -10.62131 -10.26634 -9.99050 -9.90905 -9.29534 -8.20928 -8.11940 -7.04677 -6.59560 -4.64621 1.67029 2.17148 3.04537 3.10930 3.16008 3.62696 3.98383 4.03388 4.55887 5.15718 5.27275 5.51071 5.67142 5.68782 6.05993 6.34903 6.68054 6.85798 7.00075 7.23001 7.25892 7.97094 8.09087 8.32796 8.68358 8.82838 9.89616 10.33186 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.092781 B = 0.010716 C = 0.009647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 301.713844 B = 2612.382930 C = 2901.883543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.076 3.924 3 Si 0.922 3.078 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.426 4.426 8 H 0.092 0.908 9 C 0.367 3.633 10 N -0.507 5.507 11 C 0.256 3.744 12 C -0.126 4.126 13 C -0.078 4.078 14 C -0.226 4.226 15 C 0.131 3.869 16 N -0.305 5.305 17 N -0.455 5.455 18 H 0.277 0.723 19 H 0.136 0.864 20 H 0.128 0.872 21 H 0.137 0.863 22 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 -6.067 -0.789 6.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.149 4.149 3 Si 0.746 3.254 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.110 0.890 9 C 0.116 3.884 10 N -0.235 5.235 11 C -0.001 4.001 12 C -0.150 4.150 13 C -0.104 4.104 14 C -0.251 4.251 15 C -0.003 4.003 16 N -0.079 5.079 17 N -0.296 5.296 18 H 0.087 0.913 19 H 0.154 0.846 20 H 0.146 0.854 21 H 0.154 0.846 22 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.017 -5.477 -0.729 5.882 hybrid contribution 0.146 0.424 -0.053 0.451 sum -1.871 -5.053 -0.782 5.445 Atomic orbital electron populations 1.70040 1.07169 1.28415 1.30933 1.25964 0.94967 1.01154 0.92793 0.86089 0.80295 0.80024 0.79041 1.19414 1.20062 1.18405 1.18537 0.94576 0.86535 1.46885 0.88980 1.21094 0.86483 0.91836 0.89003 1.71698 1.14449 1.10124 1.27273 1.22479 0.88981 0.89571 0.99089 1.20074 0.94710 0.93711 1.06456 1.20817 0.97936 0.93423 0.98274 1.20367 0.91119 0.99970 1.13613 1.21200 0.99714 0.81592 0.97841 1.48147 1.08093 1.05923 1.45743 1.79183 1.03896 0.97932 1.48555 0.91257 0.84596 0.85449 0.84568 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.62 11.91 55.54 0.66 -19.96 14 2 C 0.08 2.03 5.49 -17.36 -0.10 1.93 14 3 Si 0.92 19.33 29.56 -169.99 -5.03 14.31 14 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 14 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 14 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 14 7 C -0.43 -12.30 9.50 -37.70 -0.36 -12.65 14 8 H 0.09 2.53 7.85 -52.49 -0.41 2.12 14 9 C 0.37 11.11 7.58 -158.10 -1.20 9.91 14 10 N -0.51 -15.02 9.41 -11.99 -0.11 -15.13 14 11 C 0.26 6.56 7.87 -156.15 -1.23 5.33 14 12 C -0.13 -2.53 10.11 -39.33 -0.40 -2.93 14 13 C -0.08 -1.24 10.07 -39.54 -0.40 -1.64 14 14 C -0.23 -3.49 9.99 -39.86 -0.40 -3.88 14 15 C 0.13 2.48 11.20 -16.78 -0.19 2.29 14 16 N -0.30 -7.59 3.90 -12.23 -0.05 -7.64 14 17 N -0.45 -13.03 12.87 30.81 0.40 -12.63 14 18 H 0.28 6.89 8.30 -40.82 -0.34 6.55 14 19 H 0.14 2.46 8.06 -52.49 -0.42 2.04 14 20 H 0.13 1.49 8.06 -52.49 -0.42 1.07 14 21 H 0.14 1.54 8.06 -52.49 -0.42 1.12 14 22 H 0.15 2.33 8.06 -52.49 -0.42 1.91 14 LS Contribution 209.17 15.07 3.15 3.15 Total: -1.00 -33.52 209.17 -6.48 -40.00 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -1.24 Total: -0.45 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -4.26 Total: -1.64 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.90 Total: -55.36 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -33.52 -6.48 -40.00 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107832177.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.610 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds