Wall clock time and date at job start Mon Mar 30 2020 02:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86802 * 120.00245 * 2 1 4 4 H 1.48507 * 109.46668 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47195 * 120.00329 * 3 2 1 6 6 H 1.48500 * 109.47503 * 240.00769 * 3 2 1 7 7 C 1.39941 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00402 * 154.97443 * 7 2 1 9 9 C 1.41404 * 120.00022 * 334.97186 * 7 2 1 10 10 C 1.40733 * 120.24241 * 333.59214 * 9 7 2 11 11 C 1.37593 * 119.74254 * 179.71775 * 10 9 7 12 12 C 1.38656 * 120.24813 * 0.57362 * 11 10 9 13 13 C 1.38610 * 120.50366 * 359.67839 * 12 11 10 14 14 C 1.37636 * 120.24661 * 0.04190 * 13 12 11 15 15 C 1.50705 * 120.12808 * 180.02562 * 14 13 12 16 16 C 1.52999 * 117.49771 * 8.60001 * 15 14 13 17 17 C 1.52995 * 117.49843 * 299.97654 * 15 14 13 18 18 H 0.97002 * 120.00244 * 174.31489 * 1 2 3 19 19 H 1.08003 * 120.12403 * 359.97438 * 10 9 7 20 20 H 1.08004 * 119.87218 * 180.29862 * 11 10 9 21 21 H 1.08007 * 119.74879 * 179.69718 * 12 11 10 22 22 H 1.08002 * 119.87701 * 180.02562 * 13 12 11 23 23 H 1.09002 * 115.54950 * 154.30336 * 15 14 13 24 24 H 1.09001 * 117.49838 * 0.02562 * 16 15 14 25 25 H 1.08995 * 117.50301 * 145.02223 * 16 15 14 26 26 H 1.08995 * 117.49870 * 214.98118 * 17 15 14 27 27 H 1.09008 * 117.49586 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2772 2.7464 0.0006 5 1 3.0961 1.6963 1.2124 6 1 3.0959 1.6965 -1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0119 -1.2557 -0.3962 9 6 1.4005 -2.3793 0.5170 10 6 0.3954 -2.2803 1.4971 11 6 -0.1928 -3.4227 1.9893 12 6 0.2096 -4.6682 1.5320 13 6 1.2023 -4.7779 0.5708 14 6 1.8005 -3.6484 0.0601 15 6 2.8792 -3.7707 -0.9853 16 6 3.1271 -5.1559 -1.5858 17 6 4.1402 -4.5521 -0.6111 18 1 -0.4850 -0.8359 -0.0832 19 1 0.0840 -1.3113 1.8583 20 1 -0.9678 -3.3490 2.7380 21 1 -0.2542 -5.5599 1.9275 22 1 1.5076 -5.7532 0.2216 23 1 2.9974 -2.9086 -1.6418 24 1 2.5098 -5.9786 -1.2252 25 1 3.4085 -5.2054 -2.6377 26 1 5.0881 -4.2043 -1.0217 27 1 4.1898 -4.9774 0.3913 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114912731.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:15 Heat of formation + Delta-G solvation = 26.203643 kcal Electronic energy + Delta-G solvation = -11029.730471 eV Core-core repulsion = 9138.189176 eV Total energy + Delta-G solvation = -1891.541295 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 188.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.33087 -35.77072 -33.77895 -29.65882 -28.99241 -25.05534 -22.67370 -21.82773 -20.77489 -19.05477 -17.76998 -15.61386 -14.73153 -14.22980 -13.81880 -13.64184 -12.91010 -12.29497 -11.96377 -11.43823 -11.20338 -11.09077 -10.85450 -10.42326 -10.35857 -10.02778 -9.82003 -9.39563 -9.28413 -8.92654 -7.55374 -7.44838 -7.08826 -4.39986 2.75030 2.82990 3.17091 3.29234 3.37546 4.03961 4.49967 4.70447 5.41786 5.47433 5.66822 5.90606 5.97454 6.17588 6.21316 6.38771 6.40115 6.66811 6.76374 6.78676 7.08136 7.19721 7.43126 7.70910 7.85233 7.88518 7.95430 8.22610 8.34353 8.79973 8.92738 10.08946 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.035153 B = 0.015111 C = 0.011239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.322664 B = 1852.458433 C = 2490.679634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.038 3.962 3 Si 1.063 2.937 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.078 0.922 9 C 0.106 3.894 10 C -0.218 4.218 11 C -0.088 4.088 12 C -0.254 4.254 13 C -0.081 4.081 14 C -0.169 4.169 15 C -0.066 4.066 16 C -0.195 4.195 17 C -0.186 4.186 18 H 0.299 0.701 19 H 0.105 0.895 20 H 0.088 0.912 21 H 0.087 0.913 22 H 0.090 0.910 23 H 0.105 0.895 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 -2.769 -0.948 4.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.183 4.183 3 Si 0.887 3.113 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.096 0.904 9 C 0.103 3.897 10 C -0.238 4.238 11 C -0.107 4.107 12 C -0.273 4.273 13 C -0.099 4.099 14 C -0.171 4.171 15 C -0.084 4.084 16 C -0.232 4.232 17 C -0.223 4.223 18 H 0.112 0.888 19 H 0.123 0.877 20 H 0.107 0.893 21 H 0.106 0.894 22 H 0.109 0.891 23 H 0.123 0.877 24 H 0.108 0.892 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.471 -1.111 -0.899 3.754 hybrid contribution 0.129 -1.813 -0.004 1.817 sum 3.600 -2.924 -0.902 4.725 Atomic orbital electron populations 1.70444 1.08243 1.34267 1.29285 1.26984 0.95693 1.04247 0.91402 0.83665 0.75677 0.73992 0.77960 1.19928 1.20042 1.20177 1.20535 1.03004 0.93837 1.37381 0.90437 1.17459 0.90595 0.91952 0.89681 1.21143 1.03879 0.96996 1.01755 1.20615 0.98295 0.93233 0.98552 1.20298 1.05044 0.95840 1.06165 1.20445 0.96447 0.96317 0.96679 1.18930 1.02817 0.93265 1.02040 1.20730 0.94964 0.93561 0.99145 1.22978 1.04048 0.98486 0.97717 1.22930 0.93875 1.05842 0.99639 0.88752 0.87722 0.89349 0.89446 0.89149 0.87683 0.89239 0.89787 0.89817 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.40 12.35 55.55 0.69 -20.71 15 2 C 0.04 0.98 4.94 -17.35 -0.09 0.89 15 3 Si 1.06 21.70 30.00 -169.99 -5.10 16.60 15 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 6 H -0.28 -5.34 7.11 56.52 0.40 -4.94 15 7 C -0.52 -13.74 8.18 -37.74 -0.31 -14.05 15 8 H 0.08 1.99 6.91 -52.48 -0.36 1.63 15 9 C 0.11 2.82 5.28 -106.82 -0.56 2.26 15 10 C -0.22 -5.70 7.95 -38.88 -0.31 -6.01 15 11 C -0.09 -2.11 10.02 -39.66 -0.40 -2.50 15 12 C -0.25 -5.81 10.05 -39.29 -0.39 -6.21 15 13 C -0.08 -1.85 9.29 -39.66 -0.37 -2.22 15 14 C -0.17 -4.13 5.67 -103.91 -0.59 -4.72 15 15 C -0.07 -1.40 5.35 -91.77 -0.49 -1.89 15 16 C -0.20 -3.43 9.86 -26.73 -0.26 -3.70 15 17 C -0.19 -3.35 10.16 -26.73 -0.27 -3.62 15 18 H 0.30 8.25 6.69 -40.82 -0.27 7.98 15 19 H 0.10 2.80 6.55 -52.48 -0.34 2.46 15 20 H 0.09 1.87 8.06 -52.48 -0.42 1.44 15 21 H 0.09 1.77 8.06 -52.48 -0.42 1.35 15 22 H 0.09 1.84 6.02 -52.49 -0.32 1.53 15 23 H 0.11 2.31 7.00 -51.93 -0.36 1.95 15 24 H 0.09 1.54 6.18 -51.93 -0.32 1.22 15 25 H 0.08 1.30 8.14 -51.93 -0.42 0.88 15 26 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 27 H 0.09 1.58 8.14 -51.92 -0.42 1.16 15 LS Contribution 230.31 15.07 3.47 3.47 Total: -1.00 -27.17 230.31 -7.88 -35.05 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -2.89 Total: 7.36 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: -4.04 Total: -41.78 kcal Atomic # 7 Polarization: -21.40 SS G_CDS: 0.69 Total: -20.71 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.10 Total: 16.60 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -27.17 -7.88 -35.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114912731.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.254 kcal (2) G-P(sol) polarization free energy of solvation -27.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds