Wall clock time and date at job start Mon Mar 30 2020 02:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48506 * 109.47140 * 269.99992 * 3 2 1 5 5 H 1.48504 * 109.47200 * 29.99940 * 3 2 1 6 6 H 1.48502 * 109.47384 * 150.00237 * 3 2 1 7 7 C 1.40031 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.41404 * 120.00452 * 0.02562 * 7 2 1 10 10 C 1.40653 * 119.82618 * 179.97438 * 9 7 2 11 11 C 1.38067 * 118.80725 * 179.97438 * 10 9 7 12 12 C 1.39081 * 118.79101 * 0.02562 * 11 10 9 13 13 C 1.38799 * 119.67233 * 0.02562 * 12 11 10 14 14 N 1.31856 * 120.50454 * 359.97438 * 13 12 11 15 15 C 1.51522 * 109.50106 * 179.97438 * 13 12 11 16 16 C 1.54571 * 105.25049 * 17.28668 * 15 13 12 17 17 C 1.51291 * 130.50762 * 180.02562 * 12 11 10 18 18 H 0.97000 * 120.00549 * 359.97438 * 1 2 3 19 19 H 1.07994 * 120.59701 * 359.95421 * 10 9 7 20 20 H 1.08005 * 120.60516 * 179.97438 * 11 10 9 21 21 H 1.08999 * 110.29050 * 136.20951 * 15 13 12 22 22 H 1.08993 * 110.29025 * 258.23662 * 15 13 12 23 23 H 1.09003 * 110.89203 * 215.27135 * 16 15 13 24 24 H 1.09003 * 110.83668 * 91.68356 * 16 15 13 25 25 H 1.09002 * 110.30742 * 281.70869 * 17 12 11 26 26 H 1.09000 * 110.30356 * 43.77336 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4387 2.6527 0.7000 6 1 3.5389 1.4403 0.7000 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0001 9 6 1.3006 -2.4374 0.0005 10 6 2.0077 -3.6532 0.0005 11 6 1.2963 -4.8365 0.0011 12 6 -0.0935 -4.7826 0.0011 13 6 -0.7333 -3.5509 0.0000 14 7 -0.0337 -2.4332 -0.0005 15 6 -2.2340 -3.7604 -0.0005 16 6 -2.4399 -5.2266 0.4436 17 6 -1.1201 -5.8939 0.0021 18 1 -0.4851 0.8400 0.0004 19 1 3.0876 -3.6611 -0.0002 20 1 1.8097 -5.7868 0.0007 21 1 -2.7106 -3.0813 0.7064 22 1 -2.6367 -3.6070 -1.0015 23 1 -3.2906 -5.6729 -0.0714 24 1 -2.5634 -5.2906 1.5247 25 1 -1.2244 -6.3135 -0.9985 26 1 -0.8344 -6.6720 0.7100 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125086813.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:58 Heat of formation + Delta-G solvation = 2.067685 kcal Electronic energy + Delta-G solvation = -11118.537405 eV Core-core repulsion = 9160.523585 eV Total energy + Delta-G solvation = -1958.013820 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 189.085 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.63845 -37.05146 -34.91023 -32.70803 -30.65432 -28.35508 -26.92971 -23.58776 -21.93372 -21.29019 -19.26733 -17.29227 -16.45338 -16.33689 -15.56573 -15.35587 -14.29255 -13.96461 -13.55729 -13.43065 -12.98770 -12.86380 -12.74140 -12.33424 -12.13585 -11.86686 -11.76412 -11.72343 -11.05537 -10.02938 -9.36240 -9.25943 -8.25947 -6.49438 0.85402 1.14553 1.38794 1.51396 1.54461 2.22262 2.81673 3.66200 3.85840 3.95909 4.29397 4.40471 4.50197 4.62700 4.90977 4.96797 5.02525 5.08079 5.15004 5.20900 5.30425 5.46073 5.58228 5.77731 5.88946 6.16256 6.31031 6.74397 6.97094 8.21694 8.46277 Molecular weight = 189.08amu Principal moments of inertia in cm(-1) A = 0.064723 B = 0.011603 C = 0.009953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.509040 B = 2412.659702 C = 2812.516722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.022 3.978 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.475 4.475 8 H 0.088 0.912 9 C 0.224 3.776 10 C -0.300 4.300 11 C -0.051 4.051 12 C -0.303 4.303 13 C 0.106 3.894 14 N -0.519 5.519 15 C -0.064 4.064 16 C -0.103 4.103 17 C -0.049 4.049 18 H 0.278 0.722 19 H 0.111 0.889 20 H 0.128 0.872 21 H 0.063 0.937 22 H 0.078 0.922 23 H 0.104 0.896 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 -4.774 0.181 5.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.199 4.199 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.507 4.507 8 H 0.107 0.893 9 C 0.099 3.901 10 C -0.322 4.322 11 C -0.075 4.075 12 C -0.307 4.307 13 C -0.039 4.039 14 N -0.232 5.232 15 C -0.102 4.102 16 C -0.140 4.140 17 C -0.087 4.087 18 H 0.088 0.912 19 H 0.129 0.871 20 H 0.146 0.854 21 H 0.082 0.918 22 H 0.097 0.903 23 H 0.122 0.878 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.090 -3.827 0.184 4.922 hybrid contribution 1.062 0.075 -0.045 1.066 sum -2.027 -3.753 0.139 4.268 Atomic orbital electron populations 1.70256 1.08968 1.28952 1.29994 1.27042 0.95769 1.04657 0.92454 0.85101 0.78930 0.75479 0.79476 1.18659 1.19153 1.17861 1.19978 0.94684 0.90476 1.45513 0.89345 1.18956 0.88275 0.93431 0.89457 1.21881 0.99356 0.93810 1.17197 1.20760 0.93160 0.97300 0.96249 1.21372 0.94484 0.97515 1.17347 1.22685 0.97793 0.89626 0.93770 1.67902 1.07582 1.28859 1.18861 1.20971 0.89102 0.98434 1.01710 1.22295 0.97753 0.92511 1.01488 1.20619 0.92148 0.94800 1.01114 0.91177 0.87110 0.85443 0.91822 0.90349 0.87790 0.90899 0.91088 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -42.96 11.46 21.84 0.25 -42.71 15 2 C 0.02 1.16 5.50 85.29 0.47 1.63 15 3 Si 0.99 39.54 29.56 68.60 2.03 41.57 15 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 5 H -0.27 -10.13 7.11 99.48 0.71 -9.42 15 6 H -0.26 -9.77 7.11 99.48 0.71 -9.06 15 7 C -0.48 -27.20 9.14 23.48 0.21 -26.99 15 8 H 0.09 4.71 7.85 -2.91 -0.02 4.69 15 9 C 0.22 13.27 6.55 40.27 0.26 13.53 15 10 C -0.30 -15.69 9.85 22.82 0.22 -15.46 15 11 C -0.05 -2.34 10.15 22.43 0.23 -2.11 15 12 C -0.30 -13.70 6.18 -19.34 -0.12 -13.81 15 13 C 0.11 5.39 7.32 42.95 0.31 5.70 15 14 N -0.52 -30.83 7.85 -176.23 -1.38 -32.21 15 15 C -0.06 -2.51 6.77 30.64 0.21 -2.30 15 16 C -0.10 -3.02 7.09 31.59 0.22 -2.80 15 17 C -0.05 -1.62 6.76 30.49 0.21 -1.41 15 18 H 0.28 14.14 8.29 -92.71 -0.77 13.37 15 19 H 0.11 5.32 8.06 -2.91 -0.02 5.29 15 20 H 0.13 4.85 8.06 -2.91 -0.02 4.83 15 21 H 0.06 2.51 8.14 -2.39 -0.02 2.49 15 22 H 0.08 2.89 8.14 -2.39 -0.02 2.87 15 23 H 0.10 2.29 8.14 -2.39 -0.02 2.27 15 24 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 25 H 0.07 2.12 8.14 -2.39 -0.02 2.10 15 26 H 0.07 2.09 8.14 -2.39 -0.02 2.07 15 Total: -1.00 -67.51 226.62 4.29 -63.21 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.17 Total: 14.16 kcal Atomic # 6 Polarization: -46.25 SS G_CDS: 2.23 Total: -44.02 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -1.13 Total: -74.93 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -67.51 4.29 -63.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125086813.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.281 kcal (2) G-P(sol) polarization free energy of solvation -67.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds