Wall clock time and date at job start Mon Mar 30 2020 01:54:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86798 * 119.99828 * 2 1
4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1
5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1
6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1
7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1
9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1
10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2
11 11 O 1.42963 * 109.47286 * 295.00426 * 10 9 7
12 12 C 1.43091 * 113.77117 * 181.20513 * 11 10 9
13 13 C 1.53261 * 108.94289 * 57.96821 * 12 11 10
14 14 O 1.42901 * 109.57300 * 65.28880 * 13 12 11
15 15 C 1.53259 * 108.84379 * 305.47825 * 13 12 11
16 16 O 1.42959 * 109.47295 * 175.00133 * 10 9 7
17 17 H 0.96996 * 120.00505 * 359.97438 * 1 2 3
18 18 H 1.09001 * 109.46665 * 60.00499 * 9 7 2
19 19 H 1.08993 * 109.47304 * 300.00055 * 9 7 2
20 20 H 1.09007 * 109.46744 * 55.00219 * 10 9 7
21 21 H 1.09000 * 109.55815 * 298.12706 * 12 11 10
22 22 H 1.08999 * 109.55824 * 177.80684 * 12 11 10
23 23 H 1.08994 * 109.57502 * 185.66905 * 13 12 11
24 24 H 0.96689 * 114.00383 * 60.63863 * 14 13 12
25 25 H 1.08996 * 109.56016 * 294.68300 * 15 13 12
26 26 H 1.09000 * 109.56034 * 174.36261 * 15 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3465 -0.0006
5 1 1.8903 2.3965 -1.2124
6 1 1.8904 2.3964 1.2126
7 6 2.0045 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 6 2.2454 -3.6621 -0.0005
11 8 2.9881 -3.6541 -1.2221
12 6 3.9307 -4.7251 -1.3310
13 6 3.1857 -6.0584 -1.2039
14 8 2.3012 -6.2203 -2.3146
15 6 2.3785 -6.0522 0.0988
16 8 1.5346 -4.8968 0.1169
17 1 -0.4851 0.8400 0.0004
18 1 0.6242 -2.5567 -0.8904
19 1 0.6248 -2.5571 0.8896
20 1 2.9295 -3.5551 0.8414
21 1 4.6702 -4.6429 -0.5344
22 1 4.4285 -4.6761 -2.2995
23 1 3.9042 -6.8778 -1.1845
24 1 2.7459 -6.2330 -3.1730
25 1 3.0590 -6.0203 0.9496
26 1 1.7661 -6.9523 0.1530
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000144620899.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:54:36
Heat of formation + Delta-G solvation = -175.481068 kcal
Electronic energy + Delta-G solvation = -12054.198558 eV
Core-core repulsion = 9710.769543 eV
Total energy + Delta-G solvation = -2343.429015 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 188.088 amu
Computer time = 0.13 seconds
Orbital eigenvalues (eV)
-40.97659 -37.47039 -36.57422 -35.28168 -32.54926 -30.44001 -27.03527 -26.45291
-23.16583 -21.93606 -18.88728 -18.50231 -17.84167 -17.49912 -16.71818 -16.41480
-15.92167 -14.97029 -14.50944 -14.29384 -14.26090 -13.53152 -13.12331 -13.02339
-12.59725 -12.45817 -12.00240 -11.80951 -11.39980 -11.16564 -10.75547 -10.60432
-10.41996 -8.22767 -6.34314 1.41094 1.43261 1.56675 2.38317 2.77107
2.85958 3.13264 3.34193 3.73646 3.81096 3.93772 4.26832 4.38113
4.53191 4.61953 4.73845 4.81979 5.27625 5.37256 5.70386 6.08014
6.08301 6.42237 6.77794 6.87806 7.33600 8.91063
Molecular weight = 188.09amu
Principal moments of inertia in cm(-1)
A = 0.070983 B = 0.010165 C = 0.009616
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 394.365251 B = 2753.790860 C = 2911.136878
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.002 4.002
3 Si 0.978 3.022
4 H -0.260 1.260
5 H -0.278 1.278
6 H -0.273 1.273
7 C -0.530 4.530
8 H 0.064 0.936
9 C 0.040 3.960
10 C 0.265 3.735
11 O -0.401 6.401
12 C 0.007 3.993
13 C 0.040 3.960
14 O -0.575 6.575
15 C 0.045 3.955
16 O -0.419 6.419
17 H 0.266 0.734
18 H -0.007 1.007
19 H 0.016 0.984
20 H 0.057 0.943
21 H 0.075 0.925
22 H 0.118 0.882
23 H 0.116 0.884
24 H 0.392 0.608
25 H 0.090 0.910
26 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.219 -10.933 -1.298 15.022
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.200 4.200
3 Si 0.801 3.199
4 H -0.184 1.184
5 H -0.204 1.204
6 H -0.199 1.199
7 C -0.568 4.568
8 H 0.083 0.917
9 C 0.003 3.997
10 C 0.171 3.829
11 O -0.322 6.322
12 C -0.069 4.069
13 C -0.019 4.019
14 O -0.383 6.383
15 C -0.031 4.031
16 O -0.340 6.340
17 H 0.075 0.925
18 H 0.011 0.989
19 H 0.034 0.966
20 H 0.074 0.926
21 H 0.093 0.907
22 H 0.136 0.864
23 H 0.133 0.867
24 H 0.242 0.758
25 H 0.108 0.892
26 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 9.409 -10.709 -0.944 14.287
hybrid contribution 0.638 0.628 -0.336 0.956
sum 10.047 -10.082 -1.280 14.290
Atomic orbital electron populations
1.70126 1.08011 1.28069 1.51269 1.26044 0.95848 1.03660 0.94413
0.85213 0.78900 0.77848 0.77905 1.18388 1.20377 1.19869 1.21331
0.93468 0.90917 1.51062 0.91735 1.18894 0.93675 0.91046 0.96055
1.23459 0.89861 0.84280 0.85311 1.88241 1.53527 1.49161 1.41276
1.23746 0.91396 0.87019 1.04757 1.23167 0.92925 0.97712 0.88094
1.86590 1.38084 1.95967 1.17693 1.23046 0.95250 0.89168 0.95635
1.88153 1.36874 1.15673 1.93311 0.92498 0.98907 0.96567 0.92605
0.90675 0.86384 0.86702 0.75849 0.89183 0.87135
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.89 13.29 21.45 0.28 -58.61 15
2 C 0.00 -0.12 5.46 84.65 0.46 0.34 15
3 Si 0.98 45.26 29.54 68.60 2.03 47.29 15
4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 15
5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15
6 H -0.27 -12.11 7.11 99.48 0.71 -11.41 15
7 C -0.53 -31.63 8.88 25.60 0.23 -31.40 15
8 H 0.06 3.69 7.74 -2.91 -0.02 3.67 15
9 C 0.04 2.36 5.05 29.85 0.15 2.52 15
10 C 0.26 12.53 3.19 71.98 0.23 12.76 15
11 O -0.40 -17.90 10.26 -122.97 -1.26 -19.16 15
12 C 0.01 0.21 6.61 72.07 0.48 0.69 15
13 C 0.04 1.03 3.91 30.77 0.12 1.15 15
14 O -0.58 -17.14 13.26 -134.83 -1.79 -18.93 15
15 C 0.04 1.34 6.63 72.07 0.48 1.82 15
16 O -0.42 -18.43 10.50 -122.97 -1.29 -19.72 15
17 H 0.27 15.55 8.31 -92.71 -0.77 14.78 15
18 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 15
19 H 0.02 0.99 8.14 -2.39 -0.02 0.97 15
20 H 0.06 2.46 8.14 -2.38 -0.02 2.44 15
21 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15
22 H 0.12 2.72 8.14 -2.39 -0.02 2.70 15
23 H 0.12 1.82 8.14 -2.39 -0.02 1.80 15
24 H 0.39 7.70 9.09 -74.06 -0.67 7.03 15
25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 15
26 H 0.11 2.92 8.14 -2.39 -0.02 2.90 15
Total: -1.00 -76.14 228.16 0.61 -75.52
By element:
Atomic # 1 Polarization: 5.25 SS G_CDS: 0.50 Total: 5.75 kcal
Atomic # 6 Polarization: -14.28 SS G_CDS: 2.14 Total: -12.13 kcal
Atomic # 7 Polarization: -58.89 SS G_CDS: 0.28 Total: -58.61 kcal
Atomic # 8 Polarization: -53.48 SS G_CDS: -4.34 Total: -57.81 kcal
Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal
Total: -76.14 0.61 -75.52 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000144620899.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -99.959 kcal
(2) G-P(sol) polarization free energy of solvation -76.137 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.096 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.522 kcal
(6) G-S(sol) free energy of system = (1) + (5) -175.481 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds