Wall clock time and date at job start Mon Mar 30 2020 02:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50700 * 109.46867 * 81.63172 * 3 2 1 5 5 C 1.38927 * 119.87583 * 84.98212 * 4 3 2 6 6 N 1.32329 * 120.42939 * 180.02562 * 5 4 3 7 7 C 1.31829 * 120.17863 * 359.68126 * 6 5 4 8 8 C 1.40764 * 119.74420 * 0.59248 * 7 6 5 9 9 C 1.41350 * 120.20780 * 179.70845 * 8 7 6 10 10 H 1.07998 * 119.99776 * 204.82923 * 9 8 7 11 11 C 1.40069 * 119.99927 * 24.83925 * 9 8 7 12 12 N 1.30716 * 120.00153 * 17.43957 * 11 9 8 13 13 Si 1.86800 * 119.99638 * 197.44059 * 11 9 8 14 14 H 1.48502 * 109.47128 * 265.17618 * 13 11 9 15 15 H 1.48494 * 109.47517 * 25.17993 * 13 11 9 16 16 H 1.48505 * 109.47024 * 145.18074 * 13 11 9 17 17 N 1.31704 * 119.87688 * 265.00054 * 4 3 2 18 18 H 1.09002 * 109.47121 * 321.63457 * 3 2 1 19 19 H 1.08996 * 109.47003 * 201.63021 * 3 2 1 20 20 H 1.08002 * 119.77976 * 359.97438 * 5 4 3 21 21 H 1.08002 * 120.12474 * 180.27605 * 7 6 5 22 22 H 0.97000 * 120.00333 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1104 -0.2059 -1.4057 5 6 3.2413 0.8813 -2.2606 6 7 3.6808 0.7125 -3.4973 7 6 4.0048 -0.4910 -3.9269 8 6 3.8696 -1.5987 -3.0688 9 6 4.2083 -2.8943 -3.5213 10 1 3.7566 -3.7616 -3.0629 11 6 5.1300 -3.0533 -4.5640 12 7 5.9246 -2.0679 -4.8899 13 14 5.2235 -4.6736 -5.4888 14 1 6.2840 -5.5242 -4.8911 15 1 3.9169 -5.3730 -5.3956 16 1 5.5441 -4.4118 -6.9150 17 7 3.4235 -1.4165 -1.8193 18 1 2.9718 -0.8049 0.6379 19 1 2.9709 0.9561 0.3788 20 1 2.9817 1.8707 -1.9138 21 1 4.3677 -0.6272 -4.9350 22 1 6.5626 -2.1778 -5.6123 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147160013.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:55 Heat of formation + Delta-G solvation = 51.954222 kcal Electronic energy + Delta-G solvation = -10529.399720 eV Core-core repulsion = 8470.008799 eV Total energy + Delta-G solvation = -2059.390921 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.29163 -36.30008 -34.31414 -33.00270 -31.45972 -28.05606 -26.05571 -22.23011 -21.89273 -17.93139 -16.94729 -16.29549 -15.36797 -15.01281 -14.50382 -13.72308 -13.33773 -13.01713 -12.38219 -11.98341 -11.74173 -11.45476 -11.29428 -11.14458 -10.96585 -10.48896 -9.95842 -9.83496 -9.32618 -7.92493 -7.48286 -7.13958 -4.80529 2.22732 2.64142 2.94950 2.98836 3.04985 3.14086 3.17691 3.72521 4.29296 4.55073 5.18140 5.48771 5.58577 5.83312 5.91187 6.28714 6.40961 6.83458 6.87788 7.13401 7.51437 7.90966 8.05096 8.32298 8.39318 9.04116 9.51321 9.84849 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.059873 B = 0.010314 C = 0.009317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.541529 B = 2714.200950 C = 3004.595006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.227 3.773 3 C 0.034 3.966 4 C 0.093 3.907 5 C -0.092 4.092 6 N -0.442 5.442 7 C 0.016 3.984 8 C 0.226 3.774 9 C -0.420 4.420 10 H 0.092 0.908 11 C 0.075 3.925 12 N -0.781 5.781 13 Si 0.925 3.075 14 H -0.266 1.266 15 H -0.257 1.257 16 H -0.271 1.271 17 N -0.522 5.522 18 H 0.119 0.881 19 H 0.117 0.883 20 H 0.130 0.870 21 H 0.160 0.840 22 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.057 -0.032 2.428 2.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.090 4.090 3 C -0.007 4.007 4 C -0.053 4.053 5 C -0.248 4.248 6 N -0.154 5.154 7 C -0.156 4.156 8 C 0.098 3.902 9 C -0.454 4.454 10 H 0.110 0.890 11 C -0.147 4.147 12 N -0.406 5.406 13 Si 0.748 3.252 14 H -0.191 1.191 15 H -0.180 1.180 16 H -0.196 1.196 17 N -0.241 5.241 18 H 0.137 0.863 19 H 0.135 0.865 20 H 0.148 0.852 21 H 0.177 0.823 22 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.478 0.086 2.320 2.370 hybrid contribution 0.709 -0.611 -0.460 1.043 sum 0.231 -0.525 1.859 1.946 Atomic orbital electron populations 1.81124 1.13056 1.09747 1.09172 1.29045 0.95033 0.92416 0.92534 1.17952 0.81393 1.05434 0.95962 1.21128 0.97908 0.91861 0.94390 1.22464 1.11591 0.98082 0.92704 1.67951 1.07211 1.25756 1.14495 1.23846 1.02349 0.88045 1.01364 1.19329 0.88851 0.95095 0.86892 1.19401 1.20159 0.92601 1.13221 0.88974 1.26058 0.93280 0.99536 0.95814 1.69708 1.13679 1.33168 1.24034 0.86013 0.80111 0.80502 0.78588 1.19126 1.18026 1.19615 1.68679 1.18081 1.21532 1.15795 0.86304 0.86482 0.85214 0.82263 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.71 18.54 42.15 0.78 -7.93 14 2 C 0.23 3.88 15.42 -20.76 -0.32 3.56 14 3 C 0.03 0.51 5.98 -30.67 -0.18 0.32 14 4 C 0.09 1.97 6.00 -82.39 -0.49 1.47 14 5 C -0.09 -2.02 10.90 -17.08 -0.19 -2.20 14 6 N -0.44 -10.96 10.48 -12.33 -0.13 -11.09 14 7 C 0.02 0.40 9.89 -16.60 -0.16 0.24 14 8 C 0.23 5.93 6.41 -84.82 -0.54 5.38 14 9 C -0.42 -10.62 9.29 -37.71 -0.35 -10.97 14 10 H 0.09 2.27 7.91 -52.49 -0.41 1.86 14 11 C 0.07 1.73 5.15 -17.34 -0.09 1.64 14 12 N -0.78 -18.55 10.95 55.55 0.61 -17.94 14 13 Si 0.92 17.17 29.59 -169.99 -5.03 12.14 14 14 H -0.27 -4.87 7.11 56.52 0.40 -4.47 14 15 H -0.26 -4.79 7.11 56.52 0.40 -4.39 14 16 H -0.27 -4.89 7.11 56.52 0.40 -4.49 14 17 N -0.52 -12.83 10.38 -7.19 -0.07 -12.90 14 18 H 0.12 1.58 8.14 -51.93 -0.42 1.16 14 19 H 0.12 1.28 8.12 -51.93 -0.42 0.85 14 20 H 0.13 2.39 8.06 -52.49 -0.42 1.97 14 21 H 0.16 4.12 6.17 -52.49 -0.32 3.80 14 22 H 0.29 6.15 8.29 -40.82 -0.34 5.81 14 LS Contribution 216.99 15.07 3.27 3.27 Total: -1.00 -28.86 216.99 -4.05 -32.91 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -1.14 Total: 2.11 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.33 Total: -0.56 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 1.19 Total: -49.87 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -28.86 -4.05 -32.91 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147160013.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.862 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds