Wall clock time and date at job start Mon Mar 30 2020 02:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50700 * 109.46867 * 81.63172 * 3 2 1 5 5 C 1.38927 * 119.87583 * 84.98212 * 4 3 2 6 6 N 1.32329 * 120.42939 * 180.02562 * 5 4 3 7 7 C 1.31829 * 120.17863 * 359.68126 * 6 5 4 8 8 C 1.40764 * 119.74420 * 0.59248 * 7 6 5 9 9 C 1.41350 * 120.20780 * 179.70845 * 8 7 6 10 10 H 1.07998 * 119.99776 * 204.82923 * 9 8 7 11 11 C 1.40069 * 119.99927 * 24.83925 * 9 8 7 12 12 N 1.30716 * 120.00153 * 17.43957 * 11 9 8 13 13 Si 1.86800 * 119.99638 * 197.44059 * 11 9 8 14 14 H 1.48502 * 109.47128 * 265.17618 * 13 11 9 15 15 H 1.48494 * 109.47517 * 25.17993 * 13 11 9 16 16 H 1.48505 * 109.47024 * 145.18074 * 13 11 9 17 17 N 1.31704 * 119.87688 * 265.00054 * 4 3 2 18 18 H 1.09002 * 109.47121 * 321.63457 * 3 2 1 19 19 H 1.08996 * 109.47003 * 201.63021 * 3 2 1 20 20 H 1.08002 * 119.77976 * 359.97438 * 5 4 3 21 21 H 1.08002 * 120.12474 * 180.27605 * 7 6 5 22 22 H 0.97000 * 120.00333 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1104 -0.2059 -1.4057 5 6 3.2413 0.8813 -2.2606 6 7 3.6808 0.7125 -3.4973 7 6 4.0048 -0.4910 -3.9269 8 6 3.8696 -1.5987 -3.0688 9 6 4.2083 -2.8943 -3.5213 10 1 3.7566 -3.7616 -3.0629 11 6 5.1300 -3.0533 -4.5640 12 7 5.9246 -2.0679 -4.8899 13 14 5.2235 -4.6736 -5.4888 14 1 6.2840 -5.5242 -4.8911 15 1 3.9169 -5.3730 -5.3956 16 1 5.5441 -4.4118 -6.9150 17 7 3.4235 -1.4165 -1.8193 18 1 2.9718 -0.8049 0.6379 19 1 2.9709 0.9561 0.3788 20 1 2.9817 1.8707 -1.9138 21 1 4.3677 -0.6272 -4.9350 22 1 6.5626 -2.1778 -5.6123 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147160013.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:55 Heat of formation + Delta-G solvation = 32.232060 kcal Electronic energy + Delta-G solvation = -10530.254937 eV Core-core repulsion = 8470.008799 eV Total energy + Delta-G solvation = -2060.246138 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.07680 -37.73258 -36.07868 -34.75286 -33.13708 -29.69299 -27.83754 -24.04856 -23.65061 -19.66140 -18.37725 -18.06365 -17.14967 -16.71086 -16.03066 -15.08151 -14.99201 -14.68048 -13.89045 -13.49773 -13.44812 -13.12916 -12.85427 -12.66304 -12.45114 -12.00581 -11.82883 -11.64310 -11.06752 -9.73495 -9.32198 -8.88021 -6.67768 0.47857 0.85667 1.41650 1.50455 1.58686 1.77500 1.81990 2.17581 2.58443 3.16186 3.61786 3.80330 4.13495 4.22638 4.54408 4.75801 4.85220 5.04746 5.08993 5.35535 5.71774 6.15434 6.50118 6.53336 6.60826 7.20086 7.67644 8.13795 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.059873 B = 0.010314 C = 0.009317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.541529 B = 2714.200950 C = 3004.595006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.247 3.753 3 C 0.044 3.956 4 C 0.097 3.903 5 C -0.098 4.098 6 N -0.457 5.457 7 C -0.019 4.019 8 C 0.199 3.801 9 C -0.453 4.453 10 H 0.087 0.913 11 C 0.041 3.959 12 N -0.807 5.807 13 Si 0.999 3.001 14 H -0.257 1.257 15 H -0.259 1.259 16 H -0.260 1.260 17 N -0.541 5.541 18 H 0.142 0.858 19 H 0.171 0.829 20 H 0.170 0.830 21 H 0.147 0.853 22 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.310 -0.035 3.246 3.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.070 4.070 3 C 0.003 3.997 4 C -0.050 4.050 5 C -0.255 4.255 6 N -0.169 5.169 7 C -0.188 4.188 8 C 0.072 3.928 9 C -0.485 4.485 10 H 0.105 0.895 11 C -0.179 4.179 12 N -0.432 5.432 13 Si 0.817 3.183 14 H -0.182 1.182 15 H -0.183 1.183 16 H -0.184 1.184 17 N -0.261 5.261 18 H 0.160 0.840 19 H 0.189 0.811 20 H 0.187 0.813 21 H 0.164 0.836 22 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.209 0.082 3.119 3.127 hybrid contribution 0.616 -0.492 -0.609 0.996 sum 0.407 -0.410 2.510 2.575 Atomic orbital electron populations 1.81158 1.14440 1.11443 1.10208 1.29310 0.95225 0.91057 0.91418 1.18226 0.79729 1.09269 0.92432 1.21948 0.95768 0.90461 0.96865 1.23207 1.10281 1.00227 0.91829 1.67899 1.07386 1.25401 1.16235 1.23607 1.05243 0.88717 1.01258 1.19609 0.89740 0.95652 0.87780 1.19657 1.21504 0.92328 1.15042 0.89477 1.26929 0.92085 1.03132 0.95739 1.69732 1.13921 1.35059 1.24456 0.84937 0.79981 0.75797 0.77539 1.18161 1.18278 1.18351 1.68752 1.18550 1.23466 1.15294 0.84026 0.81148 0.81292 0.83566 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -18.11 18.54 20.01 0.37 -17.73 14 2 C 0.25 7.71 15.42 89.44 1.38 9.09 14 3 C 0.04 1.13 5.98 28.04 0.17 1.30 14 4 C 0.10 3.88 6.00 42.74 0.26 4.13 14 5 C -0.10 -4.09 10.90 84.78 0.92 -3.16 14 6 N -0.46 -22.59 10.48 -192.92 -2.02 -24.61 14 7 C -0.02 -1.02 9.89 85.31 0.84 -0.17 14 8 C 0.20 10.63 6.41 40.21 0.26 10.88 14 9 C -0.45 -23.38 9.29 23.48 0.22 -23.16 14 10 H 0.09 4.41 7.91 -2.91 -0.02 4.39 14 11 C 0.04 1.88 5.15 85.30 0.44 2.32 14 12 N -0.81 -38.86 10.95 21.84 0.24 -38.62 14 13 Si 1.00 34.91 29.59 68.60 2.03 36.94 14 14 H -0.26 -8.58 7.11 99.48 0.71 -7.87 14 15 H -0.26 -9.07 7.11 99.48 0.71 -8.36 14 16 H -0.26 -8.50 7.11 99.48 0.71 -7.79 14 17 N -0.54 -26.36 10.38 -176.67 -1.83 -28.20 14 18 H 0.14 3.15 8.14 -2.39 -0.02 3.13 14 19 H 0.17 2.68 8.12 -2.39 -0.02 2.66 14 20 H 0.17 5.56 8.06 -2.91 -0.02 5.54 14 21 H 0.15 7.92 6.17 -2.91 -0.02 7.90 14 22 H 0.30 12.79 8.29 -92.71 -0.77 12.02 14 Total: -1.00 -63.91 216.99 4.52 -59.39 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 1.25 Total: 11.60 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 4.49 Total: 1.23 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -3.25 Total: -109.17 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Total: -63.91 4.52 -59.39 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147160013.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.626 kcal (2) G-P(sol) polarization free energy of solvation -63.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds