Wall clock time and date at job start Mon Mar 30 2020 02:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.50703 * 109.47209 * 138.18013 * 3 2 1 5 5 N 1.31825 * 120.12779 * 89.99926 * 4 3 2 6 6 C 1.32333 * 120.17717 * 179.97438 * 5 4 3 7 7 C 1.38925 * 120.43030 * 359.97438 * 6 5 4 8 8 N 1.31704 * 120.25210 * 0.02562 * 7 6 5 9 9 C 1.33938 * 119.81045 * 359.97438 * 8 7 6 10 10 C 1.41357 * 120.20512 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99569 * 179.97438 * 10 9 8 12 12 C 1.40061 * 120.00287 * 359.97438 * 10 9 8 13 13 N 1.30723 * 120.00098 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00279 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47093 * 89.99496 * 14 12 10 16 16 H 1.48502 * 109.47130 * 210.00146 * 14 12 10 17 17 H 1.48502 * 109.46537 * 329.99661 * 14 12 10 18 18 H 1.09005 * 109.47192 * 18.17840 * 3 2 1 19 19 H 1.09004 * 109.47032 * 258.18017 * 3 2 1 20 20 H 1.07999 * 119.78626 * 180.02562 * 6 5 4 21 21 H 1.08003 * 119.87810 * 179.72261 * 7 6 5 22 22 H 0.96998 * 120.00490 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1098 1.0598 -0.9474 5 7 3.3298 2.2850 -0.5137 6 6 3.7710 3.2156 -1.3446 7 6 4.0071 2.9123 -2.6796 8 7 3.7930 1.6937 -3.1311 9 6 3.3465 0.7441 -2.2986 10 6 3.1144 -0.5667 -2.7741 11 1 2.7548 -1.3299 -2.0999 12 6 3.3509 -0.8758 -4.1196 13 7 3.7858 0.0481 -4.9358 14 14 3.0449 -2.6082 -4.7478 15 1 1.6435 -2.7211 -5.2257 16 1 3.9751 -2.9001 -5.8680 17 1 3.2730 -3.5806 -3.6488 18 1 2.9717 -0.9756 -0.3206 19 1 2.9712 0.2113 1.0059 20 1 3.9495 4.2173 -0.9824 21 1 4.3629 3.6798 -3.3510 22 1 3.9499 -0.1660 -5.8675 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147219378.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:53 Heat of formation + Delta-G solvation = 60.568717 kcal Electronic energy + Delta-G solvation = -10764.404716 eV Core-core repulsion = 8705.387348 eV Total energy + Delta-G solvation = -2059.017368 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.17535 -35.92711 -34.18731 -32.69426 -31.36407 -27.95649 -26.05496 -22.30660 -21.59196 -17.76643 -16.89903 -16.34575 -15.11604 -14.87314 -14.17969 -13.41398 -13.16828 -12.85706 -12.34350 -11.94599 -11.58790 -11.43300 -11.34657 -10.98532 -10.63846 -10.17448 -9.94714 -9.64773 -9.18142 -7.92867 -7.54856 -6.64139 -4.85408 2.34596 2.81048 2.96585 2.98900 3.08535 3.48634 3.51263 3.75139 4.51476 4.86417 5.49875 5.65836 5.81402 5.99777 6.17140 6.33134 6.44078 6.77881 6.89620 7.03451 7.51283 7.87969 8.21404 8.30364 8.50585 9.09731 9.71132 9.99464 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.031718 B = 0.016961 C = 0.011815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.574803 B = 1650.439310 C = 2369.205901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.234 3.766 3 C 0.052 3.948 4 C -0.058 4.058 5 N -0.415 5.415 6 C -0.121 4.121 7 C 0.089 3.911 8 N -0.453 5.453 9 C 0.217 3.783 10 C -0.408 4.408 11 H 0.094 0.906 12 C 0.065 3.935 13 N -0.703 5.703 14 Si 0.911 3.089 15 H -0.266 1.266 16 H -0.273 1.273 17 H -0.256 1.256 18 H 0.118 0.882 19 H 0.104 0.896 20 H 0.128 0.872 21 H 0.131 0.869 22 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 -2.303 1.628 3.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.083 4.083 3 C 0.011 3.989 4 C -0.208 4.208 5 N -0.128 5.128 6 C -0.280 4.280 7 C -0.081 4.081 8 N -0.170 5.170 9 C 0.092 3.908 10 C -0.439 4.439 11 H 0.112 0.888 12 C -0.162 4.162 13 N -0.323 5.323 14 Si 0.734 3.266 15 H -0.191 1.191 16 H -0.198 1.198 17 H -0.180 1.180 18 H 0.135 0.865 19 H 0.122 0.878 20 H 0.146 0.854 21 H 0.149 0.851 22 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.860 -2.276 1.369 2.792 hybrid contribution 0.387 -0.443 -0.479 0.758 sum 1.247 -2.718 0.890 3.120 Atomic orbital electron populations 1.81052 1.13317 1.10176 1.10219 1.29375 0.95333 0.91854 0.91783 1.17679 0.80999 0.99891 1.00317 1.20940 1.13233 0.92613 0.94043 1.67379 1.06605 1.00742 1.38077 1.22532 1.14198 0.98547 0.92770 1.23512 0.94823 0.95701 0.94084 1.69592 1.14159 0.99030 1.34215 1.19172 0.89848 0.93829 0.87973 1.19771 1.35174 0.94278 0.94637 0.88777 1.26174 0.93583 0.99430 0.97050 1.70072 1.23994 1.33406 1.04838 0.86246 0.79371 0.81495 0.79498 1.19131 1.19776 1.18005 0.86453 0.87760 0.85399 0.85130 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.25 18.54 42.15 0.78 -9.47 14 2 C 0.23 4.69 15.41 -20.76 -0.32 4.37 14 3 C 0.05 0.95 5.51 -30.67 -0.17 0.78 14 4 C -0.06 -1.32 6.06 -81.64 -0.50 -1.81 14 5 N -0.42 -9.61 10.41 -8.59 -0.09 -9.70 14 6 C -0.12 -2.66 11.23 -17.08 -0.19 -2.85 14 7 C 0.09 2.04 11.22 -17.35 -0.19 1.84 14 8 N -0.45 -11.82 8.05 -10.93 -0.09 -11.91 14 9 C 0.22 5.50 6.55 -84.81 -0.56 4.94 14 10 C -0.41 -9.84 8.68 -37.71 -0.33 -10.17 14 11 H 0.09 2.03 6.04 -52.48 -0.32 1.71 14 12 C 0.07 1.53 5.50 -17.34 -0.10 1.44 14 13 N -0.70 -17.45 11.49 55.55 0.64 -16.82 14 14 Si 0.91 17.20 29.56 -169.99 -5.02 12.18 14 15 H -0.27 -5.11 7.11 56.52 0.40 -4.71 14 16 H -0.27 -5.04 7.11 56.52 0.40 -4.64 14 17 H -0.26 -4.66 7.11 56.52 0.40 -4.26 14 18 H 0.12 1.88 6.34 -51.93 -0.33 1.55 14 19 H 0.10 1.59 8.14 -51.93 -0.42 1.17 14 20 H 0.13 2.41 8.06 -52.49 -0.42 1.99 14 21 H 0.13 2.55 8.06 -52.48 -0.42 2.13 14 22 H 0.28 6.24 8.29 -40.82 -0.34 5.91 14 LS Contribution 214.45 15.07 3.23 3.23 Total: -1.00 -29.15 214.45 -3.95 -33.10 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -1.05 Total: 0.85 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.35 Total: -1.46 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 1.24 Total: -47.90 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.02 Total: 12.18 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -29.15 -3.95 -33.10 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147219378.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.666 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds