Wall clock time and date at job start Mon Mar 30 2020 02:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.50696 * 109.46883 * 54.97635 * 3 2 1 5 5 C 1.38329 * 120.37405 * 125.00022 * 4 3 2 6 6 C 1.40904 * 118.15612 * 180.02562 * 5 4 3 7 7 C 1.41543 * 120.66025 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00064 * 6.92384 * 7 6 5 9 9 C 1.40112 * 120.00202 * 186.93078 * 7 6 5 10 10 N 1.30672 * 120.00159 * 182.48678 * 9 7 6 11 11 Si 1.86800 * 119.99793 * 2.48573 * 9 7 6 12 12 H 1.48498 * 109.47270 * 180.02562 * 11 9 7 13 13 H 1.48503 * 109.47108 * 300.00003 * 11 9 7 14 14 H 1.48495 * 109.47236 * 59.99947 * 11 9 7 15 15 N 1.34064 * 118.67639 * 0.27873 * 6 5 4 16 16 C 1.31381 * 120.58002 * 359.43854 * 15 6 5 17 17 N 1.32050 * 122.04302 * 0.57521 * 16 15 6 18 18 H 1.08991 * 109.47133 * 294.97163 * 3 2 1 19 19 H 1.09007 * 109.46519 * 174.97585 * 3 2 1 20 20 H 1.07999 * 120.92108 * 0.04296 * 5 4 3 21 21 H 0.96995 * 119.99974 * 354.82632 * 10 9 7 22 22 H 1.07991 * 118.97817 * 180.26966 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1106 -0.8145 -1.1635 5 6 3.9889 -0.2611 -2.0778 6 6 4.4286 -1.0652 -3.1481 7 6 5.3277 -0.5529 -4.1138 8 1 5.7706 0.4224 -3.9756 9 6 5.6431 -1.3109 -5.2492 10 7 6.5100 -0.8592 -6.1163 11 14 4.8241 -2.9673 -5.5233 12 1 5.3258 -3.5644 -6.7870 13 1 5.1429 -3.8709 -4.3887 14 1 3.3532 -2.7837 -5.6117 15 7 3.9744 -2.3234 -3.2364 16 6 3.1446 -2.7992 -2.3357 17 7 2.7161 -2.0687 -1.3226 18 1 2.9715 -0.4330 0.9315 19 1 2.9708 1.0246 -0.0900 20 1 4.3284 0.7589 -1.9739 21 1 6.8789 0.0320 -6.0140 22 1 2.7984 -3.8178 -2.4296 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147703110.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:08 Heat of formation + Delta-G solvation = 24.548781 kcal Electronic energy + Delta-G solvation = -10590.782290 eV Core-core repulsion = 8530.202980 eV Total energy + Delta-G solvation = -2060.579310 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.24464 -37.75208 -36.21769 -34.64792 -33.15932 -30.15968 -27.96034 -24.50151 -23.08995 -20.53478 -18.84598 -17.62067 -17.27753 -16.14208 -15.69721 -15.47838 -15.11874 -14.76452 -14.46867 -14.07693 -13.73090 -13.11237 -12.91436 -12.53979 -12.19105 -11.79700 -11.41090 -11.00259 -10.88556 -10.16566 -9.66332 -9.19701 -7.04529 0.48888 0.62248 1.63606 1.71583 1.81236 1.85591 2.06409 2.44551 2.64457 3.13578 3.50093 3.59468 3.81717 4.15433 4.56480 4.70126 4.77984 4.97928 5.08024 5.32041 5.57067 5.87314 6.19137 6.48191 6.62220 6.73727 7.72849 7.89302 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.064336 B = 0.011341 C = 0.010236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.108844 B = 2468.343747 C = 2734.779124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.248 3.752 3 C 0.041 3.959 4 C 0.166 3.834 5 C -0.300 4.300 6 C 0.244 3.756 7 C -0.486 4.486 8 H 0.081 0.919 9 C 0.019 3.981 10 N -0.813 5.813 11 Si 1.182 2.818 12 H -0.329 1.329 13 H -0.274 1.274 14 H -0.299 1.299 15 N -0.628 5.628 16 C 0.314 3.686 17 N -0.616 5.616 18 H 0.159 0.841 19 H 0.162 0.838 20 H 0.143 0.857 21 H 0.286 0.714 22 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 0.999 7.882 8.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.069 4.069 3 C 0.001 3.999 4 C 0.027 3.973 5 C -0.325 4.325 6 C 0.117 3.883 7 C -0.521 4.521 8 H 0.099 0.901 9 C -0.201 4.201 10 N -0.436 5.436 11 Si 1.015 2.985 12 H -0.262 1.262 13 H -0.201 1.201 14 H -0.227 1.227 15 N -0.354 5.354 16 C 0.025 3.975 17 N -0.339 5.339 18 H 0.176 0.824 19 H 0.179 0.821 20 H 0.161 0.839 21 H 0.098 0.902 22 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.390 -1.015 6.828 7.691 hybrid contribution 1.009 2.358 0.695 2.657 sum -2.381 1.342 7.524 8.005 Atomic orbital electron populations 1.81150 1.14649 1.11178 1.10479 1.29244 0.95304 0.90956 0.91421 1.18390 0.79919 1.03438 0.98173 1.21070 0.91491 0.90754 0.93947 1.22421 1.07841 1.02586 0.99686 1.19101 0.89491 0.87784 0.91959 1.20917 1.22287 1.04581 1.04326 0.90100 1.28477 0.92353 1.08237 0.91028 1.70631 1.19049 1.18941 1.34972 0.81451 0.73875 0.70723 0.72440 1.26192 1.20091 1.22747 1.67323 1.20529 1.15406 1.32163 1.24672 0.87893 0.99783 0.85170 1.68157 1.31877 1.07934 1.25948 0.82386 0.82079 0.83888 0.90233 0.78708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -17.29 18.54 20.01 0.37 -16.92 14 2 C 0.25 7.12 15.23 89.44 1.36 8.49 14 3 C 0.04 0.87 6.14 28.04 0.17 1.05 14 4 C 0.17 5.67 6.18 42.49 0.26 5.93 14 5 C -0.30 -11.65 9.57 22.94 0.22 -11.43 14 6 C 0.24 11.58 6.41 40.27 0.26 11.84 14 7 C -0.49 -24.73 9.63 23.54 0.23 -24.50 14 8 H 0.08 4.06 8.05 -2.91 -0.02 4.04 14 9 C 0.02 0.97 5.52 85.32 0.47 1.44 14 10 N -0.81 -42.37 13.64 21.85 0.30 -42.07 14 11 Si 1.18 54.82 25.58 68.60 1.75 56.58 14 12 H -0.33 -15.03 7.11 99.48 0.71 -14.32 14 13 H -0.27 -12.42 6.69 99.48 0.67 -11.75 14 14 H -0.30 -14.05 7.11 99.48 0.71 -13.34 14 15 N -0.63 -29.45 4.78 -193.53 -0.92 -30.38 14 16 C 0.31 12.87 12.27 180.93 2.22 15.09 14 17 N -0.62 -23.81 10.11 -188.34 -1.90 -25.71 14 18 H 0.16 2.37 8.14 -2.39 -0.02 2.35 14 19 H 0.16 2.21 7.94 -2.38 -0.02 2.19 14 20 H 0.14 4.74 8.01 -2.91 -0.02 4.71 14 21 H 0.29 14.24 8.72 -92.71 -0.81 13.43 14 22 H 0.20 6.61 8.06 -2.92 -0.02 6.58 14 Total: -1.00 -62.65 213.43 5.95 -56.70 By element: Atomic # 1 Polarization: -7.26 SS G_CDS: 1.16 Total: -6.10 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 5.19 Total: 7.90 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -2.16 Total: -115.09 kcal Atomic # 14 Polarization: 54.82 SS G_CDS: 1.75 Total: 56.58 kcal Total: -62.65 5.95 -56.70 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147703110.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.249 kcal (2) G-P(sol) polarization free energy of solvation -62.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds