Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42900 * 109.22135 * 60.31640 * 9 7 2 11 11 C 1.52576 * 109.22516 * 300.95712 * 9 7 2 12 12 C 1.53093 * 109.96013 * 169.00436 * 11 9 7 13 13 S 1.81749 * 108.83846 * 63.02306 * 12 11 9 14 14 C 1.81751 * 102.22214 * 306.73768 * 13 12 11 15 15 C 1.52580 * 109.22361 * 179.72002 * 9 7 2 16 16 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 17 17 H 0.96700 * 114.00295 * 300.00296 * 10 9 7 18 18 H 1.09000 * 109.39037 * 289.15356 * 11 9 7 19 19 H 1.09003 * 109.39323 * 48.85101 * 11 9 7 20 20 H 1.09000 * 109.57538 * 303.22212 * 12 11 9 21 21 H 1.09001 * 109.68754 * 182.89511 * 12 11 9 22 22 H 1.09007 * 109.57240 * 293.45625 * 14 13 12 23 23 H 1.08998 * 109.68064 * 173.14208 * 14 13 12 24 24 H 1.08998 * 109.39427 * 311.14480 * 15 9 7 25 25 H 1.08999 * 109.39022 * 70.85032 * 15 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4420 -2.5701 -1.1813 11 6 0.3526 -2.5662 1.2261 12 6 -0.6163 -3.7451 1.1027 13 16 0.3410 -5.2893 1.0565 14 6 1.5188 -4.9717 -0.2908 15 6 2.2474 -3.6547 -0.0105 16 1 -0.4850 0.8401 -0.0004 17 1 -0.2110 -1.8606 -1.2528 18 1 0.9681 -2.6954 2.1164 19 1 -0.2143 -1.6392 1.3114 20 1 -1.1957 -3.6470 0.1846 21 1 -1.2896 -3.7583 1.9598 22 1 0.9810 -4.8975 -1.2361 23 1 2.2424 -5.7850 -0.3452 24 1 2.9961 -3.4835 -0.7839 25 1 2.7391 -3.7128 0.9606 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148159612.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = -82.763394 kcal Electronic energy + Delta-G solvation = -10426.903339 eV Core-core repulsion = 8530.247735 eV Total energy + Delta-G solvation = -1896.655604 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.25649 -34.31808 -33.90464 -32.19814 -29.02229 -25.42530 -23.76053 -20.99475 -19.00007 -17.63939 -17.09202 -16.14804 -15.50332 -15.28716 -14.50716 -14.37257 -13.78727 -13.64644 -13.32650 -12.83734 -12.67174 -12.47674 -12.26633 -12.10090 -11.69988 -11.02398 -10.70548 -10.43257 -10.08248 -8.59985 -8.15236 -6.38596 1.03628 1.39590 1.42646 1.51117 1.70287 2.37855 3.01392 4.01352 4.12063 4.19757 4.35459 4.42209 4.59325 4.65323 4.90366 4.95254 5.21962 5.29810 5.53782 5.71080 5.99905 6.16255 6.66843 7.32334 7.45208 8.80725 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.072736 B = 0.013742 C = 0.012891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.861978 B = 2037.086666 C = 2171.491088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.030 3.970 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.561 4.561 8 H 0.052 0.948 9 C 0.233 3.767 10 O -0.594 6.594 11 C -0.134 4.134 12 C -0.056 4.056 13 S -0.304 6.304 14 C -0.058 4.058 15 C -0.097 4.097 16 H 0.270 0.730 17 H 0.373 0.627 18 H 0.046 0.954 19 H 0.087 0.913 20 H 0.073 0.927 21 H 0.100 0.900 22 H 0.077 0.923 23 H 0.114 0.886 24 H 0.062 0.938 25 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.567 -4.306 1.125 4.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.170 4.170 3 Si 0.783 3.217 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.599 4.599 8 H 0.070 0.930 9 C 0.193 3.807 10 O -0.403 6.403 11 C -0.174 4.174 12 C -0.204 4.204 13 S -0.079 6.079 14 C -0.206 4.206 15 C -0.136 4.136 16 H 0.079 0.921 17 H 0.223 0.777 18 H 0.065 0.935 19 H 0.105 0.895 20 H 0.091 0.909 21 H 0.118 0.882 22 H 0.096 0.904 23 H 0.133 0.867 24 H 0.081 0.919 25 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.672 -5.648 1.655 5.923 hybrid contribution 0.123 2.606 -0.643 2.686 sum 0.795 -3.042 1.012 3.303 Atomic orbital electron populations 1.69639 1.06619 1.28039 1.50728 1.25648 0.95852 1.02109 0.93388 0.85573 0.78730 0.79291 0.78094 1.20411 1.20511 1.19756 1.22054 0.93638 0.92527 1.51686 0.92990 1.18717 0.87474 0.92225 0.82236 1.86095 1.53534 1.54450 1.46214 1.22231 0.98112 0.97936 0.99120 1.23299 0.99141 0.93337 1.04666 1.86088 1.44284 1.27359 1.50140 1.23262 0.98836 1.00716 0.97801 1.21616 0.97674 0.92711 1.01559 0.92062 0.77734 0.93536 0.89461 0.90850 0.88180 0.90391 0.86748 0.91894 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.09 9.58 21.45 0.21 -46.88 15 2 C 0.03 1.54 5.16 84.66 0.44 1.98 15 3 Si 0.96 41.51 29.54 68.60 2.03 43.53 15 4 H -0.28 -11.98 7.11 99.48 0.71 -11.28 15 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 15 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 7 C -0.56 -29.57 8.19 25.60 0.21 -29.37 15 8 H 0.05 2.75 7.74 -2.91 -0.02 2.73 15 9 C 0.23 11.16 0.65 -11.82 -0.01 11.15 15 10 O -0.59 -29.64 10.66 -148.98 -1.59 -31.22 15 11 C -0.13 -6.12 4.68 30.48 0.14 -5.97 15 12 C -0.06 -2.23 6.26 72.01 0.45 -1.78 15 13 S -0.30 -11.21 22.33 -56.49 -1.26 -12.47 15 14 C -0.06 -2.12 6.26 72.01 0.45 -1.67 15 15 C -0.10 -4.02 4.80 30.49 0.15 -3.88 15 16 H 0.27 13.32 8.31 -92.70 -0.77 12.55 15 17 H 0.37 19.34 7.14 -74.06 -0.53 18.81 15 18 H 0.05 2.10 8.06 -2.39 -0.02 2.08 15 19 H 0.09 4.38 5.71 -2.39 -0.01 4.37 15 20 H 0.07 3.01 7.35 -2.39 -0.02 3.00 15 21 H 0.10 3.53 8.14 -2.39 -0.02 3.51 15 22 H 0.08 3.01 7.36 -2.38 -0.02 2.99 15 23 H 0.11 3.46 8.14 -2.39 -0.02 3.44 15 24 H 0.06 2.60 8.08 -2.39 -0.02 2.58 15 25 H 0.07 2.89 8.06 -2.39 -0.02 2.87 15 Total: -1.00 -52.92 213.52 1.87 -51.05 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.65 Total: 25.53 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 1.83 Total: -29.54 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.21 Total: -46.88 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -1.59 Total: -31.22 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: -11.21 SS G_CDS: -1.26 Total: -12.47 kcal Total: -52.92 1.87 -51.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148159612.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.711 kcal (2) G-P(sol) polarization free energy of solvation -52.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds