Wall clock time and date at job start Mon Mar 30 2020 02:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.50703 * 109.47280 * 308.27691 * 3 2 1 5 5 C 1.38924 * 119.78357 * 125.00136 * 4 3 2 6 6 N 1.31699 * 120.24731 * 179.97438 * 5 4 3 7 7 C 1.33933 * 119.81566 * 0.02562 * 6 5 4 8 8 C 1.41355 * 120.20628 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99531 * 186.22146 * 8 7 6 10 10 C 1.40065 * 120.00334 * 5.94750 * 8 7 6 11 11 N 1.30725 * 119.99826 * 354.03663 * 10 8 7 12 12 Si 1.86803 * 120.00206 * 174.04057 * 10 8 7 13 13 H 1.48498 * 109.47221 * 94.98208 * 12 10 8 14 14 H 1.48499 * 109.47277 * 214.98436 * 12 10 8 15 15 H 1.48497 * 109.46760 * 334.98411 * 12 10 8 16 16 C 1.40763 * 119.58426 * 0.24690 * 7 6 5 17 17 N 1.31827 * 119.74273 * 359.46387 * 16 7 6 18 18 H 1.09000 * 109.46761 * 188.28059 * 3 2 1 19 19 H 1.08999 * 109.47327 * 68.27682 * 3 2 1 20 20 H 1.07997 * 119.87930 * 0.02671 * 5 4 3 21 21 H 0.96996 * 119.99790 * 180.02562 * 11 10 8 22 22 H 1.07995 * 120.13208 * 179.74881 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1108 -0.8793 1.1154 5 6 3.9933 -1.9144 0.8333 6 7 4.4389 -2.6886 1.8011 7 6 4.0384 -2.4765 3.0614 8 6 4.5110 -3.3027 4.1064 9 1 4.1105 -3.1943 5.1036 10 6 5.4943 -4.2660 3.8475 11 7 5.8913 -4.4814 2.6208 12 14 6.2385 -5.2428 5.2551 13 1 5.5161 -6.5322 5.3993 14 1 7.6718 -5.5076 4.9706 15 1 6.1193 -4.4652 6.5146 16 6 3.1395 -1.4291 3.3380 17 7 2.7087 -0.6608 2.3572 18 1 2.9708 1.0178 0.1480 19 1 2.9716 -0.3795 -0.9547 20 1 4.3160 -2.0844 -0.1832 21 1 6.5720 -5.1487 2.4414 22 1 2.8077 -1.2527 4.3504 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149040515.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:57 Heat of formation + Delta-G solvation = 57.567494 kcal Electronic energy + Delta-G solvation = -10494.183323 eV Core-core repulsion = 8435.035812 eV Total energy + Delta-G solvation = -2059.147511 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.14026 -36.08744 -34.27127 -32.23400 -31.58094 -28.74135 -25.09370 -22.91897 -21.48702 -17.80131 -16.99346 -16.06575 -15.25823 -14.83428 -14.20710 -13.80866 -13.02812 -12.85467 -12.38564 -12.10336 -11.59271 -11.43696 -11.20934 -11.09860 -10.80538 -10.41375 -9.86551 -9.62265 -9.21489 -7.91939 -7.53939 -6.64910 -4.81888 2.34845 2.88398 2.96037 2.98699 3.03704 3.34664 3.38005 3.75185 4.44295 4.75420 5.41565 5.61497 5.77919 5.85194 6.02577 6.30505 6.40337 6.80509 6.91305 7.07788 7.48121 7.90187 8.13816 8.27760 8.52127 9.11389 9.72044 9.99280 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.091061 B = 0.009178 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.413517 B = 3050.003118 C = 3228.166091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.232 3.768 3 C 0.058 3.942 4 C -0.118 4.118 5 C 0.105 3.895 6 N -0.458 5.458 7 C 0.204 3.796 8 C -0.404 4.404 9 H 0.092 0.908 10 C 0.063 3.937 11 N -0.704 5.704 12 Si 0.915 3.085 13 H -0.267 1.267 14 H -0.273 1.273 15 H -0.258 1.258 16 C -0.055 4.055 17 N -0.420 5.420 18 H 0.102 0.898 19 H 0.108 0.892 20 H 0.133 0.867 21 H 0.279 0.721 22 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.757 1.358 -1.251 3.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.085 4.085 3 C 0.017 3.983 4 C -0.257 4.257 5 C -0.065 4.065 6 N -0.174 5.174 7 C 0.079 3.921 8 C -0.435 4.435 9 H 0.111 0.889 10 C -0.164 4.164 11 N -0.324 5.324 12 Si 0.738 3.262 13 H -0.192 1.192 14 H -0.198 1.198 15 H -0.181 1.181 16 C -0.227 4.227 17 N -0.132 5.132 18 H 0.120 0.880 19 H 0.126 0.874 20 H 0.150 0.850 21 H 0.090 0.910 22 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.227 1.214 -1.419 2.234 hybrid contribution 0.822 -0.488 0.631 1.146 sum 2.049 0.726 -0.788 2.312 Atomic orbital electron populations 1.81070 1.13403 1.09947 1.10215 1.29358 0.95399 0.92089 0.91699 1.17672 0.80991 1.01342 0.98322 1.20524 1.09103 1.03956 0.92160 1.23290 0.93032 0.90849 0.99339 1.69575 1.24020 1.24729 0.99075 1.19446 0.89852 0.91420 0.91380 1.19760 1.15870 1.12163 0.95681 0.88944 1.26204 0.96418 0.97000 0.96822 1.70076 1.19364 1.22860 1.20094 0.86175 0.78714 0.79993 0.81313 1.19209 1.19775 1.18131 1.23109 1.04278 0.98108 0.97241 1.67413 1.20357 1.25652 0.99815 0.88035 0.87395 0.85000 0.90958 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.53 18.54 42.15 0.78 -8.75 14 2 C 0.23 4.20 15.21 -20.76 -0.32 3.88 14 3 C 0.06 0.89 6.12 -30.67 -0.19 0.70 14 4 C -0.12 -2.46 6.17 -82.12 -0.51 -2.97 14 5 C 0.11 2.30 10.84 -17.35 -0.19 2.11 14 6 N -0.46 -11.78 8.07 -10.94 -0.09 -11.87 14 7 C 0.20 5.27 6.54 -84.81 -0.55 4.71 14 8 C -0.40 -10.00 9.16 -37.71 -0.35 -10.35 14 9 H 0.09 2.10 7.86 -52.49 -0.41 1.69 14 10 C 0.06 1.48 5.49 -17.34 -0.10 1.39 14 11 N -0.70 -17.38 11.51 55.55 0.64 -16.74 14 12 Si 0.91 17.12 29.57 -169.99 -5.03 12.10 14 13 H -0.27 -4.96 7.11 56.52 0.40 -4.56 14 14 H -0.27 -5.02 7.11 56.52 0.40 -4.61 14 15 H -0.26 -4.73 7.11 56.52 0.40 -4.33 14 16 C -0.06 -1.33 10.99 -16.60 -0.18 -1.52 14 17 N -0.42 -9.82 10.14 -8.58 -0.09 -9.90 14 18 H 0.10 1.32 8.14 -51.93 -0.42 0.90 14 19 H 0.11 1.24 7.88 -51.93 -0.41 0.83 14 20 H 0.13 2.38 7.95 -52.49 -0.42 1.96 14 21 H 0.28 6.18 8.29 -40.82 -0.34 5.84 14 22 H 0.13 2.95 8.06 -52.49 -0.42 2.53 14 LS Contribution 217.82 15.07 3.28 3.28 Total: -1.00 -29.61 217.82 -4.09 -33.70 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -1.22 Total: 0.24 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.38 Total: -2.04 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 1.25 Total: -47.27 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -29.61 -4.09 -33.70 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149040515.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.264 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds