Wall clock time and date at job start Mon Mar 30 2020 02:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99889 * 2 1 4 4 H 1.48495 * 109.46865 * 240.00006 * 3 2 1 5 5 H 1.48498 * 109.46879 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46819 * 119.99702 * 3 2 1 7 7 C 1.37871 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00092 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.28507 * 302.11436 * 9 7 2 11 11 C 1.54163 * 110.40730 * 64.28719 * 9 7 2 12 12 C 1.53875 * 108.70831 * 146.85489 * 11 9 7 13 13 C 1.55052 * 106.62173 * 312.82263 * 12 11 9 14 14 S 1.82920 * 110.32086 * 180.02562 * 9 7 2 15 15 O 1.42105 * 109.35061 * 352.26999 * 14 9 7 16 16 O 1.42099 * 109.35439 * 125.47274 * 14 9 7 17 17 H 0.97002 * 119.99944 * 0.02562 * 1 2 3 18 18 H 1.09004 * 109.64693 * 266.71184 * 11 9 7 19 19 H 1.09002 * 109.64359 * 26.99898 * 11 9 7 20 20 H 1.09001 * 110.02481 * 72.11078 * 12 11 9 21 21 H 1.08994 * 110.02892 * 193.48462 * 12 11 9 22 22 H 1.09004 * 110.78574 * 284.15971 * 13 12 11 23 23 H 1.08998 * 110.78959 * 160.70766 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5911 -2.5544 0.8662 11 6 0.4399 -2.6515 -1.3015 12 6 0.3901 -4.1421 -1.6804 13 6 1.8389 -4.6800 -1.5559 14 16 2.4190 -3.9069 0.0021 15 8 3.7423 -3.4210 -0.1775 16 8 2.1201 -4.7656 1.0941 17 1 -0.4850 0.8401 -0.0004 18 1 -0.5727 -2.2782 -1.1483 19 1 0.9197 -2.0861 -2.1005 20 1 -0.2676 -4.6791 -0.9968 21 1 0.0358 -4.2552 -2.7049 22 1 2.4466 -4.3535 -2.3999 23 1 1.8423 -5.7668 -1.4730 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164200135.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:55 Heat of formation + Delta-G solvation = -108.102721 kcal Electronic energy + Delta-G solvation = -10434.521986 eV Core-core repulsion = 8373.623014 eV Total energy + Delta-G solvation = -2060.898973 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 190.045 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.78562 -37.33270 -36.72056 -34.58391 -30.89611 -27.20818 -24.78759 -21.99440 -19.59690 -18.65076 -17.59279 -17.06663 -16.55356 -16.02135 -15.03159 -14.68625 -14.56411 -13.69089 -13.30654 -13.07323 -12.90089 -12.79119 -12.60022 -12.43860 -12.08525 -11.80271 -11.30470 -11.18518 -10.63881 -10.52267 -8.26346 -6.40717 -0.49788 1.42485 1.43426 1.51962 2.05371 2.37572 2.93395 3.09818 3.39191 3.80547 4.08834 4.33697 4.49165 4.60966 4.79047 5.01756 5.12969 5.45101 5.62248 5.68954 5.95935 6.70456 7.29202 8.83320 Molecular weight = 190.05amu Principal moments of inertia in cm(-1) A = 0.054074 B = 0.015712 C = 0.013770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.686785 B = 1781.685205 C = 2032.922305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.033 3.967 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.072 0.928 9 C -0.373 4.373 10 H 0.075 0.925 11 C -0.096 4.096 12 C -0.117 4.117 13 C -0.558 4.558 14 S 2.353 3.647 15 O -0.990 6.990 16 O -1.000 7.000 17 H 0.268 0.732 18 H 0.072 0.928 19 H 0.062 0.938 20 H 0.089 0.911 21 H 0.117 0.883 22 H 0.150 0.850 23 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 -5.862 -5.472 8.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.170 4.170 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.588 4.588 8 H 0.090 0.910 9 C -0.487 4.487 10 H 0.093 0.907 11 C -0.136 4.136 12 C -0.155 4.155 13 C -0.691 4.691 14 S 2.546 3.454 15 O -0.987 6.987 16 O -0.997 6.997 17 H 0.077 0.923 18 H 0.091 0.909 19 H 0.081 0.919 20 H 0.107 0.893 21 H 0.135 0.865 22 H 0.168 0.832 23 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.135 -6.047 -4.789 7.715 hybrid contribution -0.241 1.237 -0.153 1.269 sum -0.106 -4.811 -4.942 6.898 Atomic orbital electron populations 1.70034 1.07016 1.28065 1.48715 1.25640 0.95743 1.02181 0.93485 0.85668 0.78614 0.78601 0.79286 1.19006 1.20136 1.19892 1.20897 0.93440 0.89889 1.54528 0.91007 1.27551 1.08247 1.10067 1.02843 0.90716 1.21941 1.01551 0.94972 0.95183 1.22356 0.92815 0.94384 1.05947 1.30345 1.07591 1.12454 1.18711 1.09782 0.77584 0.78848 0.79186 1.93422 1.37320 1.80843 1.87099 1.93445 1.86545 1.66780 1.52974 0.92340 0.90908 0.91915 0.89259 0.86470 0.83221 0.82542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.05 12.40 21.45 0.27 -48.78 14 2 C 0.03 1.74 5.34 84.65 0.45 2.19 14 3 Si 0.95 42.50 29.54 68.60 2.03 44.52 14 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 14 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 14 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 14 7 C -0.55 -29.59 8.33 25.60 0.21 -29.37 14 8 H 0.07 3.98 6.69 -2.91 -0.02 3.96 14 9 C -0.37 -17.45 3.09 30.24 0.09 -17.36 14 10 H 0.07 3.76 8.14 -2.39 -0.02 3.74 14 11 C -0.10 -3.79 5.20 31.28 0.16 -3.63 14 12 C -0.12 -3.20 6.48 31.59 0.20 -3.00 14 13 C -0.56 -15.09 7.31 72.68 0.53 -14.56 14 14 S 2.35 95.64 5.95 -56.49 -0.34 95.30 14 15 O -0.99 -47.18 16.65 -127.49 -2.12 -49.30 14 16 O -1.00 -45.17 18.15 -127.49 -2.31 -47.48 14 17 H 0.27 13.80 8.31 -92.71 -0.77 13.03 14 18 H 0.07 3.08 7.80 -2.38 -0.02 3.06 14 19 H 0.06 2.54 7.85 -2.39 -0.02 2.52 14 20 H 0.09 2.23 8.14 -2.39 -0.02 2.21 14 21 H 0.12 2.47 8.14 -2.39 -0.02 2.45 14 22 H 0.15 3.54 8.14 -2.39 -0.02 3.52 14 23 H 0.16 3.20 8.14 -2.39 -0.02 3.18 14 Total: -1.00 -67.47 211.10 0.37 -67.10 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 1.20 Total: 4.36 kcal Atomic # 6 Polarization: -67.38 SS G_CDS: 1.66 Total: -65.72 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.27 Total: -48.78 kcal Atomic # 8 Polarization: -92.34 SS G_CDS: -4.44 Total: -96.78 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 95.64 SS G_CDS: -0.34 Total: 95.30 kcal Total: -67.47 0.37 -67.10 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164200135.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.007 kcal (2) G-P(sol) polarization free energy of solvation -67.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds