Wall clock time and date at job start Mon Mar 30 2020 02:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30788 * 1 3 3 Si 1.86794 * 120.00264 * 2 1 4 4 H 1.48498 * 109.47569 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47007 * 299.99471 * 3 2 1 6 6 H 1.48500 * 109.47211 * 59.99309 * 3 2 1 7 7 C 1.40115 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99674 * 197.90283 * 7 2 1 9 9 C 1.40088 * 120.00221 * 17.89620 * 7 2 1 10 10 C 1.40430 * 120.78772 * 24.54845 * 9 7 2 11 11 C 1.38226 * 121.40410 * 179.97438 * 10 9 7 12 12 C 1.37681 * 122.51793 * 0.02562 * 11 10 9 13 13 C 1.40211 * 120.49240 * 0.02562 * 12 11 10 14 14 C 1.38124 * 137.72448 * 180.02562 * 13 12 11 15 15 O 1.33853 * 105.99902 * 179.97438 * 14 13 12 16 16 N 1.21130 * 113.55804 * 0.02562 * 15 14 13 17 17 C 1.30312 * 112.21899 * 359.97438 * 16 15 14 18 18 H 0.96995 * 120.00029 * 0.02562 * 1 2 3 19 19 H 1.07996 * 119.29656 * 359.95542 * 10 9 7 20 20 H 1.08004 * 118.73630 * 179.71946 * 11 10 9 21 21 H 1.08000 * 119.75533 * 179.97438 * 12 11 10 22 22 H 1.08004 * 127.00542 * 0.03126 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6176 0.0000 4 1 3.7019 1.3463 -0.0006 5 1 1.8833 2.3963 -1.2127 6 1 1.8831 2.3965 1.2124 7 6 2.0084 -1.2135 0.0005 8 1 3.0492 -1.2359 0.2881 9 6 1.3588 -2.3975 -0.3717 10 6 0.2316 -2.3663 -1.2086 11 6 -0.4188 -3.5267 -1.5843 12 6 -0.0090 -4.7732 -1.1671 13 6 1.1059 -4.9117 -0.3282 14 6 1.8047 -5.9348 0.2823 15 8 2.7966 -5.3487 0.9637 16 7 2.8066 -4.1418 0.8621 17 6 1.8401 -3.7029 0.1062 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1352 -1.4155 -1.5660 20 1 -1.2846 -3.4524 -2.2258 21 1 -0.5508 -5.6507 -1.4876 22 1 1.5943 -6.9924 0.2215 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164721361.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:05 Heat of formation + Delta-G solvation = 49.181713 kcal Electronic energy + Delta-G solvation = -10899.959069 eV Core-core repulsion = 8808.155172 eV Total energy + Delta-G solvation = -2091.803897 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.25547 -38.52609 -35.84230 -33.29667 -32.41940 -30.98495 -27.45451 -24.86270 -23.83371 -21.50988 -19.46546 -18.48190 -18.27499 -17.95659 -16.95416 -15.90422 -14.84124 -14.71355 -14.15760 -13.61875 -13.27091 -12.93965 -12.71688 -12.50867 -12.12253 -11.98741 -11.37622 -11.29600 -10.92682 -9.91385 -9.01363 -8.73147 -6.40046 -0.06407 1.11830 1.26373 1.32401 1.49271 1.69632 2.09141 2.54271 2.71669 3.31988 3.45276 3.89728 4.38562 4.59644 4.84892 4.85499 5.11826 5.15155 5.43820 5.63817 5.79929 6.08051 6.13664 6.47208 6.57706 6.74704 7.69466 8.00941 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.052198 B = 0.013401 C = 0.010975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.292624 B = 2088.939975 C = 2550.646151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.032 3.968 3 Si 0.996 3.004 4 H -0.260 1.260 5 H -0.251 1.251 6 H -0.256 1.256 7 C -0.442 4.442 8 H 0.076 0.924 9 C 0.117 3.883 10 C -0.281 4.281 11 C -0.043 4.043 12 C -0.268 4.268 13 C -0.136 4.136 14 C -0.117 4.117 15 O 0.122 5.878 16 N -0.397 5.397 17 C -0.038 4.038 18 H 0.302 0.698 19 H 0.111 0.889 20 H 0.119 0.881 21 H 0.129 0.871 22 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.295 -2.481 -1.181 2.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.189 4.189 3 Si 0.814 3.186 4 H -0.184 1.184 5 H -0.175 1.175 6 H -0.180 1.180 7 C -0.469 4.469 8 H 0.094 0.906 9 C 0.113 3.887 10 C -0.304 4.304 11 C -0.061 4.061 12 C -0.288 4.288 13 C -0.140 4.140 14 C -0.201 4.201 15 O 0.049 5.951 16 N -0.098 5.098 17 C -0.187 4.187 18 H 0.114 0.886 19 H 0.129 0.871 20 H 0.137 0.863 21 H 0.147 0.853 22 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 1.059 -1.652 -0.485 2.021 hybrid contribution -0.531 0.453 -0.394 0.802 sum 0.527 -1.199 -0.879 1.578 Atomic orbital electron populations 1.69837 1.09283 1.32088 1.28977 1.27036 0.95730 1.04954 0.91163 0.84958 0.79051 0.74674 0.79937 1.18400 1.17488 1.18049 1.19884 0.98313 0.92591 1.36070 0.90564 1.18032 0.92863 0.87436 0.90389 1.20661 1.03436 0.97847 1.08439 1.20745 0.97086 0.92177 0.96132 1.19590 1.01581 0.97302 1.10352 1.20600 0.99709 0.91469 1.02207 1.26270 0.92348 1.00473 1.01009 1.84488 1.42967 1.13684 1.53957 1.73423 1.22391 0.92585 1.21363 1.23943 0.95601 0.98634 1.00520 0.88606 0.87118 0.86338 0.85344 0.71838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -39.05 10.97 21.86 0.24 -38.81 14 2 C 0.03 1.55 5.14 85.30 0.44 1.99 14 3 Si 1.00 36.57 29.60 68.60 2.03 38.60 14 4 H -0.26 -9.66 7.11 99.48 0.71 -8.96 14 5 H -0.25 -8.56 7.11 99.48 0.71 -7.85 14 6 H -0.26 -8.84 7.11 99.48 0.71 -8.13 14 7 C -0.44 -24.48 9.07 23.17 0.21 -24.27 14 8 H 0.08 4.23 7.91 -2.91 -0.02 4.20 14 9 C 0.12 6.68 5.72 -19.97 -0.11 6.56 14 10 C -0.28 -15.15 8.67 22.80 0.20 -14.95 14 11 C -0.04 -2.02 9.88 22.14 0.22 -1.80 14 12 C -0.27 -11.93 10.08 22.62 0.23 -11.70 14 13 C -0.14 -6.35 6.53 -20.25 -0.13 -6.48 14 14 C -0.12 -4.30 12.44 67.79 0.84 -3.45 14 15 O 0.12 5.15 11.07 73.12 0.81 5.96 14 16 N -0.40 -20.29 12.04 -45.96 -0.55 -20.84 14 17 C -0.04 -2.06 7.58 44.28 0.34 -1.73 14 18 H 0.30 13.16 8.29 -92.71 -0.77 12.40 14 19 H 0.11 6.04 6.12 -2.91 -0.02 6.02 14 20 H 0.12 4.74 8.06 -2.91 -0.02 4.72 14 21 H 0.13 4.72 8.06 -2.91 -0.02 4.69 14 22 H 0.27 6.11 8.06 -2.91 -0.02 6.09 14 Total: -1.00 -63.73 206.60 5.99 -57.73 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 1.24 Total: 13.19 kcal Atomic # 6 Polarization: -58.06 SS G_CDS: 2.22 Total: -55.83 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.31 Total: -59.65 kcal Atomic # 8 Polarization: 5.15 SS G_CDS: 0.81 Total: 5.96 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Total: -63.73 5.99 -57.73 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164721361.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.916 kcal (2) G-P(sol) polarization free energy of solvation -63.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds