Wall clock time and date at job start Mon Mar 30 2020 01:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48510 * 109.46748 * 269.99915 * 3 2 1 5 5 H 1.48498 * 109.47305 * 29.99918 * 3 2 1 6 6 H 1.48498 * 109.47340 * 150.00420 * 3 2 1 7 7 C 1.40307 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00181 * 0.02562 * 7 2 1 9 9 C 1.40077 * 120.00133 * 179.97438 * 7 2 1 10 10 C 1.35027 * 119.99852 * 188.78126 * 9 7 2 11 11 C 1.50698 * 120.00317 * 6.35752 * 10 9 7 12 12 C 1.50700 * 109.46994 * 126.17189 * 11 10 9 13 13 C 1.38233 * 120.00073 * 90.00434 * 12 11 10 14 14 C 1.38240 * 119.99965 * 180.27996 * 13 12 11 15 15 C 1.38231 * 119.99986 * 359.48130 * 14 13 12 16 16 C 1.38233 * 119.99845 * 0.51869 * 15 14 13 17 17 C 1.38230 * 120.00169 * 359.74041 * 16 15 14 18 18 H 0.97005 * 120.00015 * 0.02562 * 1 2 3 19 19 H 1.07997 * 119.99613 * 8.78677 * 9 7 2 20 20 H 1.08007 * 119.99802 * 186.36099 * 10 9 7 21 21 H 1.09001 * 109.46803 * 6.17602 * 11 10 9 22 22 H 1.09001 * 109.47424 * 246.16792 * 11 10 9 23 23 H 1.07998 * 120.00381 * 359.97438 * 13 12 11 24 24 H 1.08007 * 119.99619 * 179.72773 * 14 13 12 25 25 H 1.07997 * 119.99880 * 180.23941 * 15 14 13 26 26 H 1.08005 * 119.99834 * 179.72236 * 16 15 14 27 27 H 1.08005 * 120.00237 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 -1.4002 5 1 1.4383 2.6527 0.7000 6 1 3.5384 1.4402 0.6999 7 6 2.0084 -1.2151 0.0005 8 1 1.4684 -2.1504 0.0005 9 6 3.4091 -1.2151 0.0000 10 6 4.0841 -2.3709 -0.1780 11 6 3.3375 -3.6349 -0.5183 12 6 3.9222 -4.2430 -1.7671 13 6 4.9571 -5.1544 -1.6728 14 6 5.4973 -5.7078 -2.8187 15 6 4.9954 -5.3578 -4.0582 16 6 3.9605 -4.4463 -4.1525 17 6 3.4239 -3.8889 -3.0070 18 1 -0.4850 0.8401 -0.0004 19 1 3.9491 -0.2907 0.1420 20 1 5.1593 -2.3895 -0.0764 21 1 2.2859 -3.4018 -0.6857 22 1 3.4261 -4.3425 0.3061 23 1 5.3470 -5.4306 -0.7043 24 1 6.3089 -6.4167 -2.7452 25 1 5.4149 -5.7930 -4.9531 26 1 3.5713 -4.1694 -5.1212 27 1 2.6155 -3.1764 -3.0807 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000198814858.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:46 Heat of formation + Delta-G solvation = 18.225676 kcal Electronic energy + Delta-G solvation = -10525.593631 eV Core-core repulsion = 8633.706385 eV Total energy + Delta-G solvation = -1891.887246 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 188.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.63228 -34.70945 -32.76623 -30.54997 -30.32524 -26.57268 -23.89388 -21.97937 -20.71640 -18.53216 -17.01756 -16.03275 -14.61224 -14.57684 -14.38468 -13.55166 -12.88739 -12.81940 -12.50087 -12.20368 -11.38852 -11.33424 -11.16209 -10.55146 -10.48191 -10.15125 -9.76357 -9.44222 -9.16441 -8.39940 -7.97056 -7.75160 -6.77986 -4.26248 1.92792 1.97399 2.98502 3.11282 3.15726 3.71585 3.97983 4.39097 5.34568 5.37892 5.43018 5.54776 5.81511 6.07082 6.13373 6.40745 6.59804 6.60794 6.78152 6.98055 7.01623 7.05221 7.17788 7.37682 7.53310 7.59400 7.82544 8.43861 8.52585 8.97487 9.14107 10.26064 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.059817 B = 0.008640 C = 0.008425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.982531 B = 3240.148840 C = 3322.639836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.077 3.923 3 Si 0.902 3.098 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.450 4.450 8 H 0.090 0.910 9 C 0.007 3.993 10 C -0.397 4.397 11 C -0.015 4.015 12 C -0.042 4.042 13 C -0.131 4.131 14 C -0.125 4.125 15 C -0.148 4.148 16 C -0.123 4.123 17 C -0.116 4.116 18 H 0.281 0.719 19 H 0.066 0.934 20 H 0.067 0.933 21 H 0.077 0.923 22 H 0.037 0.963 23 H 0.114 0.886 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.800 -4.794 -4.767 8.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.178 1.178 7 C -0.480 4.480 8 H 0.108 0.892 9 C -0.013 4.013 10 C -0.419 4.419 11 C -0.052 4.052 12 C -0.042 4.042 13 C -0.149 4.149 14 C -0.143 4.143 15 C -0.166 4.166 16 C -0.141 4.141 17 C -0.135 4.135 18 H 0.092 0.908 19 H 0.084 0.916 20 H 0.085 0.915 21 H 0.096 0.904 22 H 0.056 0.944 23 H 0.132 0.868 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.131 0.869 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.515 -4.662 -4.761 8.649 hybrid contribution 0.391 0.846 -0.062 0.934 sum 5.906 -3.815 -4.823 8.526 Atomic orbital electron populations 1.69583 1.07876 1.29624 1.38094 1.26321 0.94871 1.01445 0.91344 0.86386 0.80693 0.80618 0.79643 1.19161 1.20649 1.17845 1.19641 0.91257 0.94411 1.42698 0.89244 1.20035 0.94263 0.94701 0.92312 1.21629 0.95518 0.94309 1.30487 1.19243 0.99648 0.95340 0.90955 1.20464 0.94248 0.93017 0.96500 1.21057 0.97482 0.98368 0.97978 1.21018 0.99965 1.00449 0.92918 1.20925 0.98551 1.00043 0.97067 1.21087 0.97179 0.97670 0.98157 1.21168 1.00617 0.99681 0.91986 0.90843 0.91588 0.91481 0.90422 0.94410 0.86766 0.87077 0.87150 0.86888 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.40 13.92 55.57 0.77 -21.62 15 2 C 0.08 2.02 5.52 -17.26 -0.10 1.92 15 3 Si 0.90 19.92 27.57 -169.99 -4.69 15.24 15 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 6 H -0.25 -5.54 6.22 56.52 0.35 -5.19 15 7 C -0.45 -12.33 9.07 -38.11 -0.35 -12.68 15 8 H 0.09 2.59 5.97 -52.49 -0.31 2.28 15 9 C 0.01 0.19 8.85 -40.03 -0.35 -0.17 15 10 C -0.40 -9.73 9.66 -35.45 -0.34 -10.07 15 11 C -0.02 -0.34 5.55 -29.04 -0.16 -0.50 15 12 C -0.04 -0.85 5.12 -104.62 -0.54 -1.39 15 13 C -0.13 -2.33 9.70 -39.58 -0.38 -2.71 15 14 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 15 15 C -0.15 -2.25 10.05 -39.59 -0.40 -2.65 15 16 C -0.12 -2.02 10.05 -39.59 -0.40 -2.42 15 17 C -0.12 -2.24 9.70 -39.58 -0.38 -2.63 15 18 H 0.28 6.92 8.29 -40.82 -0.34 6.58 15 19 H 0.07 1.64 5.27 -52.49 -0.28 1.36 15 20 H 0.07 1.60 8.06 -52.48 -0.42 1.18 15 21 H 0.08 1.86 5.45 -51.93 -0.28 1.58 15 22 H 0.04 0.80 8.09 -51.93 -0.42 0.38 15 23 H 0.11 1.87 8.06 -52.49 -0.42 1.45 15 24 H 0.11 1.41 8.06 -52.48 -0.42 0.99 15 25 H 0.11 1.36 8.06 -52.49 -0.42 0.94 15 26 H 0.11 1.57 8.06 -52.48 -0.42 1.15 15 27 H 0.12 2.41 8.06 -52.48 -0.42 1.99 15 LS Contribution 236.66 15.07 3.57 3.57 Total: -1.00 -27.60 236.66 -7.16 -34.75 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -3.01 Total: 3.71 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: -3.80 Total: -35.64 kcal Atomic # 7 Polarization: -22.40 SS G_CDS: 0.77 Total: -21.62 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.69 Total: 15.24 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -27.60 -7.16 -34.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198814858.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.978 kcal (2) G-P(sol) polarization free energy of solvation -27.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds