Wall clock time and date at job start Mon Mar 30 2020 01:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48510 * 109.46748 * 269.99915 * 3 2 1 5 5 H 1.48498 * 109.47305 * 29.99918 * 3 2 1 6 6 H 1.48498 * 109.47340 * 150.00420 * 3 2 1 7 7 C 1.40307 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00181 * 0.02562 * 7 2 1 9 9 C 1.40077 * 120.00133 * 179.97438 * 7 2 1 10 10 C 1.35027 * 119.99852 * 188.78126 * 9 7 2 11 11 C 1.50698 * 120.00317 * 6.35752 * 10 9 7 12 12 C 1.50700 * 109.46994 * 126.17189 * 11 10 9 13 13 C 1.38233 * 120.00073 * 90.00434 * 12 11 10 14 14 C 1.38240 * 119.99965 * 180.27996 * 13 12 11 15 15 C 1.38231 * 119.99986 * 359.48130 * 14 13 12 16 16 C 1.38233 * 119.99845 * 0.51869 * 15 14 13 17 17 C 1.38230 * 120.00169 * 359.74041 * 16 15 14 18 18 H 0.97005 * 120.00015 * 0.02562 * 1 2 3 19 19 H 1.07997 * 119.99613 * 8.78677 * 9 7 2 20 20 H 1.08007 * 119.99802 * 186.36099 * 10 9 7 21 21 H 1.09001 * 109.46803 * 6.17602 * 11 10 9 22 22 H 1.09001 * 109.47424 * 246.16792 * 11 10 9 23 23 H 1.07998 * 120.00381 * 359.97438 * 13 12 11 24 24 H 1.08007 * 119.99619 * 179.72773 * 14 13 12 25 25 H 1.07997 * 119.99880 * 180.23941 * 15 14 13 26 26 H 1.08005 * 119.99834 * 179.72236 * 16 15 14 27 27 H 1.08005 * 120.00237 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 -1.4002 5 1 1.4383 2.6527 0.7000 6 1 3.5384 1.4402 0.6999 7 6 2.0084 -1.2151 0.0005 8 1 1.4684 -2.1504 0.0005 9 6 3.4091 -1.2151 0.0000 10 6 4.0841 -2.3709 -0.1780 11 6 3.3375 -3.6349 -0.5183 12 6 3.9222 -4.2430 -1.7671 13 6 4.9571 -5.1544 -1.6728 14 6 5.4973 -5.7078 -2.8187 15 6 4.9954 -5.3578 -4.0582 16 6 3.9605 -4.4463 -4.1525 17 6 3.4239 -3.8889 -3.0070 18 1 -0.4850 0.8401 -0.0004 19 1 3.9491 -0.2907 0.1420 20 1 5.1593 -2.3895 -0.0764 21 1 2.2859 -3.4018 -0.6857 22 1 3.4261 -4.3425 0.3061 23 1 5.3470 -5.4306 -0.7043 24 1 6.3089 -6.4167 -2.7452 25 1 5.4149 -5.7930 -4.9531 26 1 3.5713 -4.1694 -5.1212 27 1 2.6155 -3.1764 -3.0807 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000198814858.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:46 Heat of formation + Delta-G solvation = 3.981877 kcal Electronic energy + Delta-G solvation = -10526.211288 eV Core-core repulsion = 8633.706385 eV Total energy + Delta-G solvation = -1892.504903 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 188.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.01279 -36.62812 -34.62335 -32.23801 -31.65814 -28.34564 -25.78210 -23.31568 -22.17767 -20.55540 -18.89456 -17.40347 -16.42546 -16.13529 -15.88233 -15.24355 -14.71919 -14.18470 -14.05751 -13.69013 -13.18392 -13.10449 -12.83700 -12.19826 -12.01476 -11.83942 -11.47518 -11.34338 -11.12631 -9.80808 -9.72564 -9.39431 -8.77195 -6.34569 0.59112 0.60735 1.20736 1.31029 1.44315 1.79897 2.14453 3.01640 3.31783 4.09658 4.19538 4.28439 4.39192 4.54960 4.70394 4.77657 4.94382 5.06850 5.21302 5.27863 5.31565 5.51444 5.67798 5.69332 5.79362 5.98972 6.23759 6.36630 6.45005 6.92872 7.10177 8.31115 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.059817 B = 0.008640 C = 0.008425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.982531 B = 3240.148840 C = 3322.639836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.031 3.969 3 Si 0.969 3.031 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.248 1.248 7 C -0.478 4.478 8 H 0.054 0.946 9 C -0.010 4.010 10 C -0.385 4.385 11 C -0.014 4.014 12 C -0.072 4.072 13 C -0.139 4.139 14 C -0.119 4.119 15 C -0.138 4.138 16 C -0.123 4.123 17 C -0.142 4.142 18 H 0.291 0.709 19 H 0.080 0.920 20 H 0.077 0.923 21 H 0.048 0.952 22 H 0.044 0.956 23 H 0.124 0.876 24 H 0.149 0.851 25 H 0.151 0.849 26 H 0.138 0.862 27 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.126 -5.064 -6.010 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.181 4.181 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.171 1.171 7 C -0.508 4.508 8 H 0.072 0.928 9 C -0.030 4.030 10 C -0.407 4.407 11 C -0.051 4.051 12 C -0.072 4.072 13 C -0.157 4.157 14 C -0.137 4.137 15 C -0.155 4.155 16 C -0.141 4.141 17 C -0.160 4.160 18 H 0.101 0.899 19 H 0.098 0.902 20 H 0.096 0.904 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.142 0.858 24 H 0.167 0.833 25 H 0.169 0.831 26 H 0.156 0.844 27 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.839 -4.950 -6.001 11.044 hybrid contribution -0.286 0.745 0.268 0.842 sum 7.553 -4.205 -5.733 10.373 Atomic orbital electron populations 1.69639 1.09336 1.31191 1.39099 1.27167 0.95690 1.04830 0.90451 0.85379 0.79535 0.76003 0.80174 1.18272 1.18938 1.17150 1.19629 0.92129 0.93942 1.45109 0.92833 1.20141 0.93659 0.95811 0.93383 1.22008 0.96093 0.94798 1.27826 1.19126 0.98016 0.95029 0.92900 1.20265 0.96244 0.95283 0.95381 1.21231 0.96848 0.97933 0.99705 1.21451 1.00144 1.00019 0.92077 1.21420 0.97111 0.98467 0.98545 1.21381 0.97283 0.97381 0.98065 1.21155 1.01080 1.00610 0.93180 0.89875 0.90195 0.90432 0.93373 0.93759 0.85756 0.83325 0.83143 0.84391 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.38 13.92 21.89 0.30 -48.07 15 2 C 0.03 1.67 5.52 85.37 0.47 2.14 15 3 Si 0.97 40.78 27.57 68.60 1.89 42.67 15 4 H -0.26 -10.47 7.11 99.48 0.71 -9.77 15 5 H -0.26 -10.38 7.11 99.48 0.71 -9.68 15 6 H -0.25 -10.06 6.22 99.48 0.62 -9.44 15 7 C -0.48 -27.37 9.07 23.22 0.21 -27.16 15 8 H 0.05 3.35 5.97 -2.91 -0.02 3.34 15 9 C -0.01 -0.52 8.85 21.98 0.19 -0.33 15 10 C -0.39 -19.11 9.66 24.95 0.24 -18.87 15 11 C -0.01 -0.64 5.55 29.10 0.16 -0.48 15 12 C -0.07 -2.90 5.12 -19.87 -0.10 -3.01 15 13 C -0.14 -4.70 9.70 22.27 0.22 -4.48 15 14 C -0.12 -3.25 10.05 22.27 0.22 -3.02 15 15 C -0.14 -3.61 10.05 22.27 0.22 -3.38 15 16 C -0.12 -3.79 10.05 22.27 0.22 -3.56 15 17 C -0.14 -5.53 9.70 22.27 0.22 -5.31 15 18 H 0.29 14.58 8.29 -92.70 -0.77 13.81 15 19 H 0.08 3.91 5.27 -2.91 -0.02 3.89 15 20 H 0.08 3.64 8.06 -2.91 -0.02 3.62 15 21 H 0.05 2.50 5.45 -2.39 -0.01 2.49 15 22 H 0.04 1.94 8.09 -2.39 -0.02 1.93 15 23 H 0.12 3.84 8.06 -2.91 -0.02 3.81 15 24 H 0.15 2.95 8.06 -2.91 -0.02 2.93 15 25 H 0.15 2.79 8.06 -2.91 -0.02 2.77 15 26 H 0.14 3.46 8.06 -2.91 -0.02 3.43 15 27 H 0.10 4.20 8.06 -2.91 -0.02 4.18 15 Total: -1.00 -61.11 236.66 5.54 -55.57 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 1.06 Total: 17.30 kcal Atomic # 6 Polarization: -69.74 SS G_CDS: 2.28 Total: -67.46 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.30 Total: -48.07 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 1.89 Total: 42.67 kcal Total: -61.11 5.54 -55.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198814858.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.552 kcal (2) G-P(sol) polarization free energy of solvation -61.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds