Wall clock time and date at job start Mon Mar 30 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38544 * 119.77711 * 2 1 4 4 C 1.37722 * 120.21619 * 179.97438 * 3 2 1 5 5 C 1.40368 * 119.77991 * 0.02562 * 4 3 2 6 6 C 1.46316 * 120.21837 * 179.97438 * 5 4 3 7 7 C 1.38206 * 119.99900 * 150.96384 * 6 5 4 8 8 C 1.38801 * 120.00405 * 352.43890 * 7 6 5 9 9 H 1.08000 * 119.99730 * 343.52542 * 8 7 6 10 10 C 1.40665 * 120.00230 * 163.53857 * 8 7 6 11 11 N 1.30529 * 119.99824 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99820 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47362 * 59.99308 * 12 10 8 14 14 H 1.48502 * 109.46982 * 179.97438 * 12 10 8 15 15 H 1.48508 * 109.47034 * 299.99554 * 12 10 8 16 16 C 1.40378 * 119.56894 * 0.24967 * 5 4 3 17 17 C 1.37732 * 119.77273 * 359.48991 * 16 5 4 18 18 H 1.08996 * 109.47578 * 90.00027 * 1 2 3 19 19 H 1.09004 * 109.47291 * 209.99954 * 1 2 3 20 20 H 1.09004 * 109.47356 * 329.99755 * 1 2 3 21 21 H 1.08004 * 119.89101 * 359.95865 * 3 2 1 22 22 H 1.08000 * 120.10998 * 179.97438 * 4 3 2 23 23 H 1.07996 * 119.99635 * 331.23248 * 6 5 4 24 24 H 1.08009 * 119.99430 * 172.43098 * 7 6 5 25 25 H 0.96997 * 119.99941 * 180.02562 * 11 10 8 26 26 H 1.08001 * 120.11462 * 179.72676 * 16 5 4 27 27 H 1.07995 * 119.88731 * 180.25131 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.2025 0.0000 4 6 3.5722 1.2131 0.0005 5 6 4.2787 0.0001 0.0005 6 6 5.7419 0.0001 0.0005 7 6 6.4329 -1.0463 0.5815 8 6 5.7480 -2.0160 1.3007 9 1 4.7384 -1.8279 1.6349 10 6 6.3690 -3.2435 1.5945 11 7 7.5891 -3.4708 1.1903 12 14 5.4474 -4.5481 2.5630 13 1 4.2177 -4.9354 1.8261 14 1 6.3155 -5.7403 2.7377 15 1 5.0763 -4.0060 3.8948 16 6 3.5723 -1.2130 -0.0053 17 6 2.1951 -1.2024 -0.0004 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3634 0.8900 0.5139 21 1 1.6496 2.1347 -0.0007 22 1 4.1069 2.1515 0.0001 23 1 6.2818 0.8200 -0.4496 24 1 7.5059 -1.1096 0.4757 25 1 8.0172 -4.3174 1.3926 26 1 4.1070 -2.1513 -0.0098 27 1 1.6498 -2.1346 -0.0008 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000201507201.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:09 Heat of formation + Delta-G solvation = 13.528144 kcal Electronic energy + Delta-G solvation = -10710.335890 eV Core-core repulsion = 8818.244944 eV Total energy + Delta-G solvation = -1892.090946 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 188.090 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.10499 -34.76838 -32.64515 -30.26468 -29.57961 -26.55917 -24.43347 -21.46992 -20.65014 -18.76134 -17.10914 -15.24966 -14.45274 -14.23756 -13.98183 -13.11863 -12.97194 -12.59119 -12.36549 -11.65275 -11.56035 -11.37304 -11.05901 -10.85049 -10.58894 -10.18424 -9.84745 -9.62793 -9.16568 -8.35385 -7.81046 -7.11572 -6.93866 -4.37478 2.27660 2.56278 2.91938 2.95401 3.00222 3.72763 3.77751 4.85346 5.37167 5.68442 5.73436 6.00151 6.06835 6.09689 6.30002 6.50455 6.68200 6.80412 6.88582 7.04254 7.18894 7.39177 7.44965 7.64279 7.77604 7.91667 8.19663 8.26802 8.46063 8.80830 9.00074 9.90471 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.043536 B = 0.011654 C = 0.009493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.984886 B = 2402.133567 C = 2948.741269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.169 4.169 3 C -0.109 4.109 4 C -0.180 4.180 5 C 0.055 3.945 6 C -0.413 4.413 7 C 0.075 3.925 8 C -0.432 4.432 9 H 0.096 0.904 10 C 0.070 3.930 11 N -0.791 5.791 12 Si 0.914 3.086 13 H -0.258 1.258 14 H -0.276 1.276 15 H -0.259 1.259 16 C -0.154 4.154 17 C -0.113 4.113 18 H 0.052 0.948 19 H 0.052 0.948 20 H 0.051 0.949 21 H 0.098 0.902 22 H 0.102 0.898 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.289 0.711 26 H 0.136 0.864 27 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.487 0.183 0.361 6.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.170 4.170 3 C -0.127 4.127 4 C -0.198 4.198 5 C 0.055 3.945 6 C -0.434 4.434 7 C 0.054 3.946 8 C -0.459 4.459 9 H 0.113 0.887 10 C -0.152 4.152 11 N -0.414 5.414 12 Si 0.737 3.263 13 H -0.182 1.182 14 H -0.200 1.200 15 H -0.184 1.184 16 C -0.172 4.172 17 C -0.131 4.131 18 H 0.070 0.930 19 H 0.071 0.929 20 H 0.070 0.930 21 H 0.116 0.884 22 H 0.120 0.880 23 H 0.096 0.904 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.154 0.846 27 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.261 -0.012 0.368 6.272 hybrid contribution -0.194 -0.544 0.418 0.713 sum -6.455 -0.557 0.786 6.527 Atomic orbital electron populations 1.20556 0.93091 1.01043 1.00558 1.19501 0.94483 0.93491 1.09500 1.20586 0.94242 0.96053 1.01824 1.21158 0.93381 0.97416 1.07862 1.18963 0.94004 0.91198 0.90331 1.21020 0.90329 1.06130 1.25903 1.20490 0.96573 0.90143 0.87398 1.20087 1.02246 0.97992 1.25573 0.88666 1.26424 0.94386 1.00617 0.93733 1.69494 1.12149 1.25024 1.34739 0.86231 0.80376 0.78824 0.80820 1.18164 1.20033 1.18354 1.21827 0.92910 0.99588 1.02907 1.20767 0.94633 0.96069 1.01676 0.92961 0.92903 0.93028 0.88406 0.88019 0.90418 0.89920 0.89988 0.84612 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 10.00 36.01 0.36 -1.11 15 2 C -0.17 -3.32 5.90 -104.40 -0.62 -3.94 15 3 C -0.11 -2.18 9.67 -39.66 -0.38 -2.57 15 4 C -0.18 -3.99 9.81 -38.97 -0.38 -4.38 15 5 C 0.06 1.36 5.50 -105.04 -0.58 0.78 15 6 C -0.41 -10.64 10.00 -36.35 -0.36 -11.00 15 7 C 0.08 1.99 9.34 -39.39 -0.37 1.62 15 8 C -0.43 -11.16 6.51 -38.46 -0.25 -11.41 15 9 H 0.10 2.47 5.35 -52.49 -0.28 2.19 15 10 C 0.07 1.69 5.51 -17.19 -0.09 1.59 15 11 N -0.79 -19.56 12.92 55.59 0.72 -18.84 15 12 Si 0.91 18.15 29.57 -169.99 -5.03 13.13 15 13 H -0.26 -5.08 7.11 56.52 0.40 -4.67 15 14 H -0.28 -5.24 7.11 56.52 0.40 -4.84 15 15 H -0.26 -5.14 7.11 56.52 0.40 -4.73 15 16 C -0.15 -3.65 7.56 -38.96 -0.29 -3.95 15 17 C -0.11 -2.38 9.67 -39.66 -0.38 -2.76 15 18 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 19 H 0.05 0.75 8.08 -51.93 -0.42 0.33 15 20 H 0.05 0.71 8.08 -51.93 -0.42 0.29 15 21 H 0.10 1.68 8.06 -52.48 -0.42 1.26 15 22 H 0.10 2.10 8.06 -52.49 -0.42 1.68 15 23 H 0.08 1.93 8.06 -52.49 -0.42 1.51 15 24 H 0.08 2.22 7.53 -52.48 -0.40 1.83 15 25 H 0.29 6.44 8.29 -40.82 -0.34 6.10 15 26 H 0.14 3.33 5.65 -52.49 -0.30 3.03 15 27 H 0.10 1.86 8.06 -52.49 -0.42 1.44 15 LS Contribution 236.63 15.07 3.57 3.57 Total: -1.00 -26.38 236.63 -7.16 -33.54 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.06 Total: 5.72 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: -3.35 Total: -37.11 kcal Atomic # 7 Polarization: -19.56 SS G_CDS: 0.72 Total: -18.84 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -26.38 -7.16 -33.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201507201.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.068 kcal (2) G-P(sol) polarization free energy of solvation -26.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds