Wall clock time and date at job start Mon Mar 30 2020 02:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 O 1.35497 * 179.97438 * 2 1 4 4 C 1.35656 * 114.00256 * 326.16194 * 3 2 1 5 5 C 1.38452 * 120.26913 * 0.26137 * 4 3 2 6 6 C 1.38304 * 120.05458 * 180.27196 * 5 4 3 7 7 C 1.38818 * 120.58949 * 359.74426 * 6 5 4 8 8 C 1.36486 * 120.54286 * 359.97438 * 7 6 5 9 9 C 1.40732 * 119.92767 * 0.02562 * 8 7 6 10 10 C 1.41139 * 120.29138 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00329 * 205.30112 * 10 9 8 12 12 C 1.39950 * 120.00152 * 25.30263 * 10 9 8 13 13 N 1.30855 * 119.99527 * 17.14946 * 12 10 9 14 14 Si 1.86792 * 120.00143 * 197.14633 * 12 10 9 15 15 H 1.48497 * 109.47372 * 265.18263 * 14 12 10 16 16 H 1.48504 * 109.47235 * 25.18451 * 14 12 10 17 17 H 1.48502 * 109.47324 * 145.18210 * 14 12 10 18 18 H 1.08001 * 119.97323 * 359.97438 * 5 4 3 19 19 H 1.07995 * 119.70532 * 179.75850 * 6 5 4 20 20 H 1.08000 * 119.72970 * 179.97438 * 7 6 5 21 21 H 1.08001 * 120.04121 * 180.02562 * 8 7 6 22 22 H 0.97006 * 119.99484 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 8 2.4910 0.0006 0.0000 4 6 3.0432 -1.0285 0.6901 5 6 2.2352 -1.9654 1.3114 6 6 2.8029 -3.0097 2.0185 7 6 4.1826 -3.1338 2.1092 8 6 5.0020 -2.2272 1.5013 9 6 4.4481 -1.1559 0.7760 10 6 5.2882 -0.2137 0.1448 11 1 4.9286 0.7861 -0.0491 12 6 6.5874 -0.5748 -0.2298 13 7 6.9173 -1.8385 -0.3115 14 14 7.8504 0.7469 -0.6133 15 1 7.8748 0.9988 -2.0765 16 1 7.4884 1.9990 0.0985 17 1 9.1922 0.2939 -0.1666 18 1 1.1606 -1.8781 1.2479 19 1 2.1673 -3.7352 2.5043 20 1 4.6111 -3.9545 2.6653 21 1 6.0742 -2.3318 1.5768 22 1 7.8179 -2.0888 -0.5709 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000206851738.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:55 Heat of formation + Delta-G solvation = 14.998073 kcal Electronic energy + Delta-G solvation = -10712.582430 eV Core-core repulsion = 8619.296220 eV Total energy + Delta-G solvation = -2093.286211 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.31778 -38.55503 -36.78687 -35.62766 -31.77766 -30.81465 -27.25996 -24.36290 -22.94088 -20.68394 -19.44703 -18.07721 -17.09802 -16.79129 -16.14467 -15.54386 -15.05197 -14.54338 -14.42294 -13.77137 -13.29283 -13.26508 -12.94366 -12.75288 -12.27270 -12.11344 -11.80162 -11.52426 -11.09154 -9.55124 -9.21987 -8.69701 -6.38714 0.73982 0.84643 0.94380 1.43516 1.51112 1.58525 1.79224 1.93407 2.22461 2.66979 3.54764 4.10105 4.19803 4.49597 4.84041 4.98099 5.12932 5.26315 5.51867 5.67147 5.92378 6.03481 6.15442 6.52249 6.72535 6.77819 7.03872 8.26147 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.039667 B = 0.013929 C = 0.010605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.708755 B = 2009.682039 C = 2639.610418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.377 3.623 3 O -0.165 6.165 4 C -0.072 4.072 5 C -0.146 4.146 6 C -0.211 4.211 7 C -0.109 4.109 8 C -0.159 4.159 9 C 0.092 3.908 10 C -0.482 4.482 11 H 0.080 0.920 12 C 0.041 3.959 13 N -0.813 5.813 14 Si 0.983 3.017 15 H -0.264 1.264 16 H -0.259 1.259 17 H -0.262 1.262 18 H 0.113 0.887 19 H 0.130 0.870 20 H 0.126 0.874 21 H 0.121 0.879 22 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 0.394 1.624 1.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C 0.027 3.973 3 O -0.063 6.063 4 C -0.115 4.115 5 C -0.165 4.165 6 C -0.231 4.231 7 C -0.127 4.127 8 C -0.179 4.179 9 C 0.089 3.911 10 C -0.510 4.510 11 H 0.098 0.902 12 C -0.176 4.176 13 N -0.438 5.438 14 Si 0.803 3.197 15 H -0.189 1.189 16 H -0.183 1.183 17 H -0.186 1.186 18 H 0.131 0.869 19 H 0.148 0.852 20 H 0.144 0.856 21 H 0.138 0.862 22 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.156 0.384 1.449 1.507 hybrid contribution 0.954 0.344 -0.273 1.050 sum 0.798 0.728 1.177 1.597 Atomic orbital electron populations 1.82122 1.03401 1.11534 1.15019 1.26345 0.85934 0.93054 0.92012 1.84994 1.06513 1.46368 1.68451 1.19284 0.93078 0.92359 1.06793 1.20961 0.97568 0.96720 1.01259 1.20594 0.94950 1.00661 1.06847 1.20842 0.93605 0.98837 0.99431 1.20986 0.99834 0.96973 1.00066 1.17325 0.87208 0.94252 0.92306 1.19715 0.97814 0.98992 1.34482 0.90189 1.26717 1.00423 0.98280 0.92210 1.69832 1.21901 1.18911 1.33170 0.85166 0.76763 0.78445 0.79294 1.18929 1.18304 1.18611 0.86881 0.85242 0.85567 0.86168 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -15.85 18.45 -103.72 -1.91 -17.76 14 2 C 0.38 15.02 14.35 132.64 1.90 16.93 14 3 O -0.16 -7.42 9.68 -28.72 -0.28 -7.70 14 4 C -0.07 -3.44 6.65 23.08 0.15 -3.29 14 5 C -0.15 -6.29 9.09 22.34 0.20 -6.08 14 6 C -0.21 -8.51 10.04 22.42 0.23 -8.28 14 7 C -0.11 -4.56 9.97 22.00 0.22 -4.34 14 8 C -0.16 -7.67 8.64 22.47 0.19 -7.47 14 9 C 0.09 4.72 5.58 -21.20 -0.12 4.60 14 10 C -0.48 -24.62 8.72 23.40 0.20 -24.42 14 11 H 0.08 4.04 7.66 -2.91 -0.02 4.02 14 12 C 0.04 1.90 5.15 85.25 0.44 2.34 14 13 N -0.81 -39.20 10.97 21.83 0.24 -38.96 14 14 Si 0.98 35.83 29.59 68.60 2.03 37.86 14 15 H -0.26 -9.42 7.11 99.48 0.71 -8.71 14 16 H -0.26 -9.41 7.11 99.48 0.71 -8.70 14 17 H -0.26 -8.96 7.11 99.48 0.71 -8.25 14 18 H 0.11 4.48 6.54 -2.91 -0.02 4.46 14 19 H 0.13 4.33 8.06 -2.91 -0.02 4.31 14 20 H 0.13 4.44 8.06 -2.91 -0.02 4.42 14 21 H 0.12 5.93 6.19 -2.91 -0.02 5.91 14 22 H 0.29 12.66 8.30 -92.70 -0.77 11.89 14 Total: -1.00 -51.98 212.98 4.75 -47.24 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.25 Total: 9.35 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 3.42 Total: -30.01 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -1.67 Total: -56.73 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.28 Total: -7.70 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Total: -51.98 4.75 -47.24 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000206851738.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.234 kcal (2) G-P(sol) polarization free energy of solvation -51.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds