Wall clock time and date at job start Mon Mar 30 2020 02:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39043 * 120.14015 * 264.52145 * 3 2 1 5 5 C 1.40489 * 119.53551 * 179.97438 * 4 3 2 6 6 C 1.41279 * 120.10122 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00023 * 204.63445 * 6 5 4 8 8 C 1.39877 * 119.99666 * 24.62808 * 6 5 4 9 9 N 1.30884 * 119.99660 * 17.96733 * 8 6 5 10 10 Si 1.86794 * 119.99755 * 197.96002 * 8 6 5 11 11 H 1.48502 * 109.46952 * 60.00590 * 10 8 6 12 12 H 1.48505 * 109.47051 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47504 * 300.00360 * 10 8 6 14 14 C 1.40960 * 119.80454 * 0.02562 * 5 4 3 15 15 C 1.36363 * 120.27275 * 359.71939 * 14 5 4 16 16 C 1.39175 * 120.47998 * 0.55883 * 15 14 5 17 17 O 1.35499 * 119.90623 * 179.72037 * 16 15 14 18 18 H 1.08000 * 120.23281 * 359.96458 * 4 3 2 19 19 H 0.97001 * 119.99520 * 179.97438 * 9 8 6 20 20 H 1.07994 * 119.86268 * 180.02562 * 14 5 4 21 21 H 1.08004 * 119.75911 * 180.29275 * 15 14 5 22 22 H 0.96707 * 113.99746 * 269.71839 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2661 0.1158 1.1970 5 6 4.6709 0.1144 1.1822 6 6 5.3923 0.2313 2.3914 7 1 6.3989 0.6223 2.3839 8 6 4.8025 -0.1594 3.5981 9 7 3.7538 -0.9425 3.5905 10 14 5.5118 0.4364 5.2201 11 1 5.4691 1.9201 5.2638 12 1 4.7116 -0.1156 6.3428 13 1 6.9188 -0.0222 5.3434 14 6 5.3586 -0.0027 -0.0426 15 6 4.6660 -0.1204 -1.2113 16 6 3.2743 -0.1147 -1.2109 17 8 2.5978 -0.2266 -2.3796 18 1 2.7322 0.2057 2.1314 19 1 3.3451 -1.2137 4.4274 20 1 6.4385 -0.0043 -0.0550 21 1 5.2014 -0.2144 -2.1446 22 1 2.4013 0.6203 -2.8029 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213762346.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:53 Heat of formation + Delta-G solvation = -22.092100 kcal Electronic energy + Delta-G solvation = -10606.413925 eV Core-core repulsion = 8511.519363 eV Total energy + Delta-G solvation = -2094.894561 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.26512 -37.60240 -37.37569 -35.15999 -31.98101 -30.99020 -26.85301 -24.27064 -22.97259 -20.08121 -19.05032 -18.04967 -16.98218 -16.17209 -16.14828 -15.19664 -14.72173 -14.44317 -13.98292 -13.87497 -13.52753 -13.30161 -12.89525 -12.58116 -12.43483 -12.03254 -11.73039 -11.15683 -10.95572 -9.59141 -9.29225 -8.69836 -6.34965 0.20888 0.87988 1.44198 1.50994 1.56253 1.71064 2.13889 2.22495 2.72488 3.16724 3.52656 3.73669 4.41862 4.82720 5.00340 5.10204 5.26214 5.36809 5.58764 5.83850 5.94489 6.13508 6.43471 6.57913 6.79878 6.85809 7.16114 8.27329 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.048740 B = 0.012219 C = 0.010050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.339671 B = 2290.879882 C = 2785.340996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C 0.292 3.708 3 C -0.053 4.053 4 C -0.126 4.126 5 C 0.074 3.926 6 C -0.480 4.480 7 H 0.094 0.906 8 C 0.035 3.965 9 N -0.824 5.824 10 Si 0.981 3.019 11 H -0.258 1.258 12 H -0.276 1.276 13 H -0.255 1.255 14 C -0.184 4.184 15 C -0.102 4.102 16 C 0.014 3.986 17 O -0.504 6.504 18 H 0.111 0.889 19 H 0.290 0.710 20 H 0.125 0.875 21 H 0.141 0.859 22 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.511 3.251 -1.953 5.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.021 4.021 3 C -0.057 4.057 4 C -0.149 4.149 5 C 0.072 3.928 6 C -0.509 4.509 7 H 0.112 0.888 8 C -0.180 4.180 9 N -0.450 5.450 10 Si 0.802 3.198 11 H -0.183 1.183 12 H -0.201 1.201 13 H -0.179 1.179 14 C -0.205 4.205 15 C -0.121 4.121 16 C -0.034 4.034 17 O -0.315 6.315 18 H 0.129 0.871 19 H 0.101 0.899 20 H 0.143 0.857 21 H 0.159 0.841 22 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 2.620 2.506 -1.690 4.000 hybrid contribution 0.322 0.479 0.708 0.913 sum 2.941 2.985 -0.982 4.304 Atomic orbital electron populations 1.81027 1.12790 1.11966 1.10116 1.26124 0.93097 0.91677 0.91241 1.16537 0.83096 1.10270 0.95845 1.21263 0.94848 1.04138 0.94609 1.17840 0.91295 0.89714 0.93979 1.19875 1.02008 1.37763 0.91242 0.88843 1.26797 0.94358 0.91966 1.04920 1.69864 1.19628 1.24144 1.31316 0.85238 0.79364 0.79720 0.75453 1.18270 1.20068 1.17890 1.21074 0.99620 1.07842 0.91914 1.20784 0.91911 1.00367 0.98991 1.17984 0.89939 1.12510 0.82958 1.84706 1.76779 1.35293 1.34681 0.87097 0.89908 0.85686 0.84129 0.75627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -21.93 18.54 19.00 0.35 -21.58 14 2 C 0.29 13.11 14.86 88.33 1.31 14.42 14 3 C -0.05 -2.39 5.74 -21.25 -0.12 -2.51 14 4 C -0.13 -6.13 8.39 23.01 0.19 -5.94 14 5 C 0.07 3.53 5.57 -21.32 -0.12 3.41 14 6 C -0.48 -22.77 9.04 23.41 0.21 -22.56 14 7 H 0.09 4.11 7.91 -2.91 -0.02 4.09 14 8 C 0.04 1.63 5.13 85.23 0.44 2.07 14 9 N -0.82 -40.59 10.96 21.82 0.24 -40.35 14 10 Si 0.98 34.96 29.60 68.60 2.03 36.99 14 11 H -0.26 -9.00 7.11 99.48 0.71 -8.29 14 12 H -0.28 -9.65 7.11 99.48 0.71 -8.94 14 13 H -0.25 -8.67 7.11 99.48 0.71 -7.96 14 14 C -0.18 -7.56 9.72 22.50 0.22 -7.34 14 15 C -0.10 -3.82 9.90 22.06 0.22 -3.60 14 16 C 0.01 0.56 6.73 23.09 0.16 0.71 14 17 O -0.50 -17.86 12.91 -88.01 -1.14 -19.00 14 18 H 0.11 5.77 6.16 -2.91 -0.02 5.75 14 19 H 0.29 13.14 8.30 -92.71 -0.77 12.37 14 20 H 0.13 4.55 8.06 -2.91 -0.02 4.53 14 21 H 0.14 4.27 8.06 -2.91 -0.02 4.25 14 22 H 0.39 9.87 9.06 -74.05 -0.67 9.20 14 Total: -1.00 -54.87 215.94 4.58 -50.28 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.59 Total: 14.99 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 2.51 Total: -21.33 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.59 Total: -61.93 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -1.14 Total: -19.00 kcal Atomic # 14 Polarization: 34.96 SS G_CDS: 2.03 Total: 36.99 kcal Total: -54.87 4.58 -50.28 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213762346.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.189 kcal (2) G-P(sol) polarization free energy of solvation -54.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds