Wall clock time and date at job start Mon Mar 30 2020 02:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86803 * 120.00422 * 2 1 4 4 H 1.48502 * 109.47195 * 240.00000 * 3 2 1 5 5 H 1.48501 * 109.46966 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47113 * 119.99463 * 3 2 1 7 7 C 1.40070 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 197.97495 * 7 2 1 9 9 C 1.41116 * 119.99940 * 17.97032 * 7 2 1 10 10 C 1.41182 * 119.97788 * 204.82381 * 9 7 2 11 11 C 1.35857 * 120.26715 * 180.02562 * 10 9 7 12 12 C 1.40293 * 120.13815 * 359.97438 * 11 10 9 13 13 C 1.46321 * 133.38570 * 180.02562 * 12 11 10 14 14 N 1.29894 * 107.50290 * 180.02562 * 13 12 11 15 15 O 1.41338 * 109.78939 * 359.97438 * 14 13 12 16 16 C 1.34958 * 109.27267 * 0.02562 * 15 14 13 17 17 C 1.38271 * 133.22368 * 179.97438 * 16 15 14 18 18 H 0.97004 * 119.99507 * 0.02562 * 1 2 3 19 19 H 1.07995 * 119.86846 * 0.02562 * 10 9 7 20 20 H 1.07999 * 119.93705 * 180.02562 * 11 10 9 21 21 H 1.08003 * 126.24992 * 359.75664 * 13 12 11 22 22 H 1.07994 * 120.20332 * 0.05051 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0954 1.6963 -1.2125 5 1 1.2767 2.7465 -0.0006 6 1 3.0953 1.6963 1.2125 7 6 2.0078 -1.2131 0.0005 8 1 3.0483 -1.2357 0.2892 9 6 1.3539 -2.4055 -0.3760 10 6 1.8275 -3.6490 0.0957 11 6 1.2027 -4.8007 -0.2635 12 6 0.0815 -4.7606 -1.1058 13 6 -0.7941 -5.7919 -1.6633 14 7 -1.6892 -5.1934 -2.3899 15 8 -1.4737 -3.7968 -2.3604 16 6 -0.4027 -3.5276 -1.5846 17 6 0.2322 -2.3544 -1.2209 18 1 -0.4849 0.8401 -0.0004 19 1 2.6900 -3.6850 0.7446 20 1 1.5693 -5.7490 0.1008 21 1 -0.7089 -6.8566 -1.5037 22 1 -0.1326 -1.4045 -1.5828 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213762602.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:03 Heat of formation + Delta-G solvation = 44.902969 kcal Electronic energy + Delta-G solvation = -10804.813522 eV Core-core repulsion = 8712.824085 eV Total energy + Delta-G solvation = -2091.989437 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.18779 -36.58768 -33.75844 -32.32127 -29.49457 -28.84203 -25.54830 -21.90762 -20.97421 -20.69321 -17.66049 -16.08592 -15.90061 -14.89397 -14.56721 -13.83258 -13.18160 -12.87887 -12.32205 -11.94145 -11.59347 -11.26628 -10.98045 -10.58673 -10.32330 -10.25358 -10.15699 -9.74250 -9.34258 -7.62820 -7.35278 -7.04513 -4.68689 1.97185 2.75551 2.92817 2.95597 2.98763 3.35586 3.71874 3.83983 4.36656 5.28750 5.38171 5.66303 5.96797 6.30067 6.61453 6.72985 6.78503 7.04637 7.21683 7.42834 7.66608 7.74381 7.85205 8.14598 8.45522 8.55457 8.68857 9.85833 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.068257 B = 0.011545 C = 0.010141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.115513 B = 2424.638274 C = 2760.284095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.435 4.435 8 H 0.089 0.911 9 C 0.144 3.856 10 C -0.217 4.217 11 C -0.028 4.028 12 C -0.323 4.323 13 C 0.111 3.889 14 N -0.355 5.355 15 O -0.125 6.125 16 C 0.108 3.892 17 C -0.206 4.206 18 H 0.289 0.711 19 H 0.106 0.894 20 H 0.101 0.899 21 H 0.185 0.815 22 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 -1.697 0.889 3.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.463 4.463 8 H 0.107 0.893 9 C 0.140 3.860 10 C -0.237 4.237 11 C -0.048 4.048 12 C -0.329 4.329 13 C -0.085 4.085 14 N -0.102 5.102 15 O -0.134 6.134 16 C 0.056 3.944 17 C -0.228 4.228 18 H 0.101 0.899 19 H 0.124 0.876 20 H 0.119 0.881 21 H 0.202 0.798 22 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.854 -1.580 0.083 2.438 hybrid contribution 0.917 0.671 0.603 1.287 sum 2.771 -0.909 0.686 2.996 Atomic orbital electron populations 1.69799 1.07952 1.30439 1.30363 1.26127 0.94845 1.02047 0.92014 0.86218 0.80167 0.79318 0.80348 1.18375 1.19962 1.18597 1.19741 0.98450 0.90984 1.37139 0.89278 1.17403 0.89556 0.92296 0.86789 1.20758 1.03916 0.92537 1.06511 1.19841 0.92992 0.97263 0.94736 1.20210 1.06247 0.90406 1.16044 1.25545 0.91296 0.99720 0.91958 1.79547 1.21766 0.86028 1.22894 1.88955 1.43054 1.19458 1.61904 1.20231 0.87366 0.95792 0.91026 1.20040 1.02096 0.93850 1.06823 0.89919 0.87620 0.88121 0.79835 0.85490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.82 10.97 55.55 0.61 -18.21 14 2 C 0.07 1.69 5.12 -17.32 -0.09 1.60 14 3 Si 0.92 17.19 29.60 -169.99 -5.03 12.16 14 4 H -0.26 -4.85 7.11 56.52 0.40 -4.45 14 5 H -0.27 -5.06 7.11 56.52 0.40 -4.66 14 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 14 7 C -0.44 -10.66 9.03 -37.80 -0.34 -11.00 14 8 H 0.09 2.02 7.91 -52.49 -0.42 1.60 14 9 C 0.14 3.67 5.57 -106.83 -0.60 3.07 14 10 C -0.22 -4.95 9.70 -39.32 -0.38 -5.33 14 11 C -0.03 -0.60 10.03 -39.66 -0.40 -1.00 14 12 C -0.32 -7.48 6.36 -104.89 -0.67 -8.15 14 13 C 0.11 2.25 12.31 -15.12 -0.19 2.07 14 14 N -0.35 -8.17 12.81 31.91 0.41 -7.76 14 15 O -0.13 -3.26 12.07 7.30 0.09 -3.17 14 16 C 0.11 2.81 7.46 -38.58 -0.29 2.52 14 17 C -0.21 -5.50 8.70 -38.71 -0.34 -5.84 14 18 H 0.29 6.45 8.29 -40.82 -0.34 6.11 14 19 H 0.11 2.15 8.06 -52.49 -0.42 1.72 14 20 H 0.10 1.75 8.06 -52.49 -0.42 1.33 14 21 H 0.18 2.69 8.06 -52.48 -0.42 2.26 14 22 H 0.13 3.49 6.16 -52.49 -0.32 3.17 14 LS Contribution 207.59 15.07 3.13 3.13 Total: -1.00 -27.99 207.59 -5.22 -33.21 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -1.14 Total: 2.70 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -3.28 Total: -22.06 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 1.02 Total: -25.97 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: 0.09 Total: -3.17 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -27.99 -5.22 -33.21 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213762602.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.116 kcal (2) G-P(sol) polarization free energy of solvation -27.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds