Wall clock time and date at job start Mon Mar 30 2020 02:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30757 * 1 3 3 Si 1.86799 * 120.00076 * 2 1 4 4 H 1.48504 * 109.47067 * 270.00287 * 3 2 1 5 5 H 1.48499 * 109.47361 * 30.00383 * 3 2 1 6 6 H 1.48497 * 109.46917 * 150.00355 * 3 2 1 7 7 C 1.40053 * 119.99545 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99657 * 198.10104 * 7 2 1 9 9 C 1.40945 * 120.00432 * 18.10163 * 7 2 1 10 10 C 1.46098 * 119.36849 * 25.08888 * 9 7 2 11 11 C 1.35172 * 120.87041 * 179.97438 * 10 9 7 12 12 C 1.45373 * 119.39943 * 0.03838 * 11 10 9 13 13 C 1.37418 * 137.00198 * 179.97438 * 12 11 10 14 14 O 1.33895 * 106.26654 * 180.02562 * 13 12 11 15 15 N 1.21080 * 113.63592 * 0.02562 * 14 13 12 16 16 C 1.31631 * 111.88193 * 359.97438 * 15 14 13 17 17 C 1.39707 * 119.37037 * 205.10899 * 9 7 2 18 18 H 0.97003 * 119.99911 * 359.97438 * 1 2 3 19 19 H 1.07992 * 119.56448 * 0.02562 * 10 9 7 20 20 H 1.07995 * 120.29773 * 180.31197 * 11 10 9 21 21 H 1.07996 * 126.86511 * 0.03943 * 13 12 11 22 22 H 1.08002 * 120.09879 * 0.03860 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4890 2.0464 -1.4001 5 1 1.4391 2.6527 0.7001 6 1 3.5391 1.4401 0.7000 7 6 2.0077 -1.2130 -0.0005 8 1 3.0477 -1.2362 0.2901 9 6 1.3553 -2.4032 -0.3803 10 6 0.1951 -2.3333 -1.2654 11 6 -0.4532 -3.4556 -1.6491 12 6 0.0129 -4.7474 -1.1721 13 6 -0.3503 -6.0643 -1.3206 14 8 0.5188 -6.7774 -0.5932 15 7 1.3490 -6.1008 -0.0284 16 6 1.1869 -4.8180 -0.2750 17 6 1.8303 -3.6272 0.0971 18 1 -0.4850 0.8401 0.0004 19 1 -0.1487 -1.3723 -1.6183 20 1 -1.3068 -3.3936 -2.3077 21 1 -1.1722 -6.4476 -1.9070 22 1 2.6891 -3.6570 0.7514 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213762940.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:07 Heat of formation + Delta-G solvation = 47.480060 kcal Electronic energy + Delta-G solvation = -10779.495646 eV Core-core repulsion = 8687.617960 eV Total energy + Delta-G solvation = -2091.877686 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.01072 -38.48424 -35.65683 -33.08103 -32.47467 -30.72619 -27.99818 -24.40436 -23.61360 -21.38372 -19.91578 -18.13235 -18.07248 -17.79181 -17.13374 -15.70907 -14.86729 -14.70570 -14.22677 -13.53890 -13.11450 -12.94686 -12.72739 -12.60736 -12.26733 -11.86146 -11.23389 -11.15820 -11.07627 -9.81254 -9.01002 -8.64444 -6.55928 0.00809 0.98216 1.38711 1.50069 1.53103 1.70103 2.14962 2.47819 2.77809 3.41569 3.51538 4.02065 4.34397 4.46237 4.64446 4.87661 5.04404 5.15127 5.53097 5.62339 5.72162 5.85335 6.05839 6.31951 6.68258 6.76334 7.90154 8.07157 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.087766 B = 0.010459 C = 0.009579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.951960 B = 2676.479797 C = 2922.414013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.041 3.959 3 Si 0.993 3.007 4 H -0.253 1.253 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.464 4.464 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.105 4.105 11 C -0.090 4.090 12 C -0.248 4.248 13 C -0.025 4.025 14 O 0.082 5.918 15 N -0.474 5.474 16 C 0.077 3.923 17 C -0.356 4.356 18 H 0.303 0.697 19 H 0.134 0.866 20 H 0.155 0.845 21 H 0.272 0.728 22 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.902 0.963 -4.858 6.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.178 4.178 3 Si 0.812 3.188 4 H -0.177 1.177 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.099 0.901 9 C 0.112 3.888 10 C -0.123 4.123 11 C -0.109 4.109 12 C -0.251 4.251 13 C -0.110 4.110 14 O 0.030 5.970 15 N -0.195 5.195 16 C -0.066 4.066 17 C -0.382 4.382 18 H 0.114 0.886 19 H 0.151 0.849 20 H 0.172 0.828 21 H 0.288 0.712 22 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.278 0.324 -4.118 5.273 hybrid contribution 0.147 1.164 0.014 1.174 sum -3.131 1.488 -4.104 5.373 Atomic orbital electron populations 1.69761 1.09114 1.32267 1.30793 1.26967 0.95655 1.04829 0.90390 0.85022 0.78864 0.74674 0.80195 1.17685 1.18362 1.18629 1.20038 0.98810 0.92156 1.38170 0.90092 1.18673 0.90141 0.92147 0.87858 1.22415 0.95251 0.98231 0.96430 1.21140 1.00430 0.88316 1.01033 1.21642 1.00580 0.96057 1.06842 1.26534 0.97324 0.89064 0.98033 1.84459 1.30894 1.35220 1.46438 1.74054 1.15530 1.04601 1.25302 1.21990 0.96242 0.91697 0.96666 1.19364 1.10742 0.89649 1.18430 0.88554 0.84873 0.82796 0.71239 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.98 10.92 21.84 0.24 -36.74 14 2 C 0.04 1.90 5.12 85.29 0.44 2.34 14 3 Si 0.99 34.41 29.60 68.60 2.03 36.44 14 4 H -0.25 -8.31 7.11 99.48 0.71 -7.61 14 5 H -0.26 -8.35 7.11 99.48 0.71 -7.64 14 6 H -0.26 -9.21 7.11 99.48 0.71 -8.51 14 7 C -0.46 -24.31 8.98 23.37 0.21 -24.10 14 8 H 0.08 4.20 7.91 -2.91 -0.02 4.18 14 9 C 0.12 6.45 5.68 -20.22 -0.11 6.34 14 10 C -0.11 -5.11 8.70 23.60 0.21 -4.90 14 11 C -0.09 -3.82 10.25 23.40 0.24 -3.58 14 12 C -0.25 -11.03 6.68 -19.07 -0.13 -11.16 14 13 C -0.02 -0.84 12.39 67.63 0.84 -0.01 14 14 O 0.08 3.41 11.06 72.79 0.81 4.22 14 15 N -0.47 -24.05 12.12 -49.29 -0.60 -24.65 14 16 C 0.08 4.16 7.56 42.26 0.32 4.48 14 17 C -0.36 -20.44 9.81 23.14 0.23 -20.21 14 18 H 0.30 12.26 8.29 -92.71 -0.77 11.50 14 19 H 0.13 6.25 6.20 -2.91 -0.02 6.24 14 20 H 0.15 5.00 8.06 -2.91 -0.02 4.97 14 21 H 0.27 5.24 8.06 -2.91 -0.02 5.22 14 22 H 0.08 4.43 8.06 -2.91 -0.02 4.40 14 Total: -1.00 -64.75 206.77 5.95 -58.80 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.24 Total: 12.75 kcal Atomic # 6 Polarization: -53.04 SS G_CDS: 2.23 Total: -50.80 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.36 Total: -61.39 kcal Atomic # 8 Polarization: 3.41 SS G_CDS: 0.81 Total: 4.22 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: 2.03 Total: 36.44 kcal Total: -64.75 5.95 -58.80 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213762940.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.276 kcal (2) G-P(sol) polarization free energy of solvation -64.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds