Wall clock time and date at job start Mon Mar 30 2020 02:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86805 * 119.99828 * 2 1 4 4 H 1.48494 * 109.47218 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46961 * 240.00182 * 3 2 1 6 6 H 1.48503 * 109.46945 * 120.00321 * 3 2 1 7 7 C 1.40389 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00047 * 349.69960 * 7 2 1 9 9 C 1.39057 * 120.00007 * 169.69551 * 7 2 1 10 10 N 1.37478 * 127.45185 * 16.58513 * 9 7 2 11 11 H 0.96998 * 124.15017 * 359.97438 * 10 9 7 12 12 N 1.28342 * 111.70991 * 179.97438 * 10 9 7 13 13 C 1.32102 * 112.90961 * 0.02562 * 12 10 9 14 14 C 1.40745 * 136.15559 * 180.02562 * 13 12 10 15 15 N 1.31284 * 119.77626 * 179.97438 * 14 13 12 16 16 C 1.32365 * 123.61471 * 359.97438 * 15 14 13 17 17 C 1.36901 * 122.25377 * 0.02562 * 16 15 14 18 18 C 1.39101 * 118.57230 * 359.69249 * 17 16 15 19 19 H 0.97002 * 119.99768 * 174.68793 * 1 2 3 20 20 H 1.08001 * 120.10977 * 359.95525 * 14 13 12 21 21 H 1.07993 * 118.87410 * 180.02562 * 16 15 14 22 22 H 1.08003 * 120.71359 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2757 2.7465 0.0006 5 1 3.0944 1.6965 -1.2125 6 1 3.0945 1.6964 1.2125 7 6 2.0087 -1.2158 -0.0005 8 1 1.4817 -2.1437 0.1663 9 6 3.3824 -1.2254 -0.2160 10 7 4.2493 -0.1617 -0.1321 11 1 3.9813 0.7425 0.0950 12 7 5.4566 -0.5116 -0.3910 13 6 5.5702 -1.7971 -0.6730 14 6 6.6179 -2.6726 -1.0148 15 7 6.3616 -3.9411 -1.2356 16 6 5.1503 -4.4687 -1.1560 17 6 4.0486 -3.7232 -0.8325 18 6 4.2158 -2.3668 -0.5736 19 1 -0.4850 -0.8365 -0.0778 20 1 7.6291 -2.3020 -1.0955 21 1 5.0268 -5.5233 -1.3531 22 1 3.0713 -4.1794 -0.7750 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213763184.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:18 Heat of formation + Delta-G solvation = 69.100164 kcal Electronic energy + Delta-G solvation = -10931.121497 eV Core-core repulsion = 8872.474080 eV Total energy + Delta-G solvation = -2058.647417 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.50165 -39.12127 -36.26956 -33.09103 -32.36671 -30.92213 -27.12813 -25.62369 -23.29709 -21.92531 -20.55840 -18.94596 -18.02617 -16.53088 -16.31639 -16.16398 -15.71145 -15.06616 -14.64596 -13.93562 -13.72925 -13.20223 -12.93303 -12.25778 -11.90201 -11.68478 -10.95701 -10.91370 -10.31466 -10.09000 -9.79568 -8.97650 -6.73529 -0.06147 0.91589 1.06690 1.18002 1.27514 1.64397 1.81871 2.23210 2.64350 3.28608 3.64565 3.87384 4.15763 4.20357 4.64400 4.79238 4.99929 5.04914 5.26306 5.45013 5.74102 5.83284 6.08081 6.16360 6.52390 7.39345 7.54678 7.65043 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.061988 B = 0.014007 C = 0.011527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.592721 B = 1998.522484 C = 2428.597443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.017 3.983 3 Si 1.048 2.952 4 H -0.234 1.234 5 H -0.255 1.255 6 H -0.240 1.240 7 C -0.465 4.465 8 H 0.096 0.904 9 C 0.209 3.791 10 N -0.451 5.451 11 H 0.420 0.580 12 N -0.403 5.403 13 C 0.044 3.956 14 C 0.086 3.914 15 N -0.459 5.459 16 C -0.060 4.060 17 C -0.049 4.049 18 C -0.290 4.290 19 H 0.299 0.701 20 H 0.170 0.830 21 H 0.165 0.835 22 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.350 0.949 0.051 1.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.207 4.207 3 Si 0.868 3.132 4 H -0.157 1.157 5 H -0.181 1.181 6 H -0.166 1.166 7 C -0.501 4.501 8 H 0.114 0.886 9 C 0.085 3.915 10 N -0.173 5.173 11 H 0.273 0.727 12 N -0.233 5.233 13 C -0.111 4.111 14 C -0.092 4.092 15 N -0.169 5.169 16 C -0.205 4.205 17 C -0.070 4.070 18 C -0.304 4.304 19 H 0.111 0.889 20 H 0.187 0.813 21 H 0.182 0.818 22 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.279 2.893 0.006 3.683 hybrid contribution -1.614 -1.556 0.268 2.258 sum 0.665 1.337 0.274 1.518 Atomic orbital electron populations 1.70469 1.07751 1.34118 1.27602 1.28231 0.96355 1.05788 0.90306 0.84018 0.76102 0.73186 0.79844 1.15728 1.18103 1.16590 1.20064 0.89981 0.98360 1.41712 0.88582 1.20108 0.91374 0.86282 0.93714 1.44396 1.03668 1.10341 1.58851 0.72699 1.72573 1.02510 1.15254 1.32989 1.21831 0.96080 0.91239 1.01960 1.21928 0.96972 0.87128 1.03187 1.66893 1.24919 1.13260 1.11822 1.21779 0.87268 1.00488 1.10939 1.20926 1.00100 0.91006 0.94948 1.20734 0.94219 0.95690 1.19779 0.88913 0.81264 0.81818 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -35.01 13.65 21.91 0.30 -34.71 14 2 C 0.02 0.75 5.53 85.39 0.47 1.22 14 3 Si 1.05 37.72 24.98 68.60 1.71 39.43 14 4 H -0.23 -7.65 7.11 99.48 0.71 -6.94 14 5 H -0.26 -9.28 6.89 99.48 0.69 -8.60 14 6 H -0.24 -7.93 6.77 99.48 0.67 -7.25 14 7 C -0.46 -22.28 9.79 22.99 0.22 -22.06 14 8 H 0.10 4.66 8.06 -2.91 -0.02 4.64 14 9 C 0.21 10.35 6.67 40.40 0.27 10.62 14 10 N -0.45 -21.44 5.83 -48.10 -0.28 -21.72 14 11 H 0.42 17.69 2.97 -220.06 -0.65 17.04 14 12 N -0.40 -19.82 12.07 -48.84 -0.59 -20.41 14 13 C 0.04 2.14 7.57 42.09 0.32 2.46 14 14 C 0.09 3.70 11.35 85.39 0.97 4.67 14 15 N -0.46 -19.42 10.23 -194.86 -1.99 -21.42 14 16 C -0.06 -2.40 11.08 84.30 0.93 -1.47 14 17 C -0.05 -2.10 10.11 22.16 0.22 -1.88 14 18 C -0.29 -14.37 6.69 -18.75 -0.13 -14.50 14 19 H 0.30 13.04 8.73 -92.71 -0.81 12.23 14 20 H 0.17 6.16 8.06 -2.91 -0.02 6.13 14 21 H 0.16 5.34 8.06 -2.91 -0.02 5.32 14 22 H 0.13 4.94 8.06 -2.91 -0.02 4.92 14 Total: -1.00 -55.23 200.22 2.94 -52.28 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.51 Total: 27.49 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 3.29 Total: -20.94 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -2.56 Total: -98.26 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 1.71 Total: 39.43 kcal Total: -55.23 2.94 -52.28 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213763184.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.383 kcal (2) G-P(sol) polarization free energy of solvation -55.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds