Wall clock time and date at job start Mon Mar 30 2020 02:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30651 * 1 3 3 Si 1.86800 * 120.00032 * 2 1 4 4 H 1.48500 * 109.47085 * 274.98829 * 3 2 1 5 5 H 1.48506 * 109.46819 * 34.98912 * 3 2 1 6 6 H 1.48500 * 109.47151 * 154.98804 * 3 2 1 7 7 C 1.40243 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00107 * 186.25049 * 7 2 1 9 9 C 1.40261 * 120.00064 * 6.25177 * 7 2 1 10 10 N 1.33744 * 120.65977 * 353.71249 * 9 7 2 11 11 C 1.32307 * 121.00623 * 180.02562 * 10 9 7 12 12 C 1.36129 * 122.16378 * 0.02562 * 11 10 9 13 13 N 1.36441 * 120.71727 * 0.02562 * 12 11 10 14 14 C 1.36448 * 133.83924 * 180.34298 * 13 12 11 15 15 C 1.35194 * 107.05371 * 180.09436 * 14 13 12 16 16 N 1.33706 * 108.55458 * 359.58405 * 15 14 13 17 17 C 1.31499 * 109.20609 * 0.26104 * 16 15 14 18 18 H 0.97006 * 120.00035 * 359.97438 * 1 2 3 19 19 H 1.07999 * 118.91689 * 179.97438 * 11 10 9 20 20 H 1.08001 * 119.63785 * 180.02562 * 12 11 10 21 21 H 1.07994 * 126.47291 * 359.97011 * 14 13 12 22 22 H 1.07998 * 125.72049 * 179.84049 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3826 2.1073 -1.3948 5 1 1.4946 2.6199 0.8029 6 1 3.5868 1.4120 0.5920 7 6 2.0077 -1.2146 -0.0005 8 1 3.0829 -1.2174 0.1013 9 6 1.3126 -2.4256 -0.1334 10 7 -0.0247 -2.4478 -0.1347 11 6 -0.6873 -3.5862 -0.2590 12 6 -0.0527 -4.7834 -0.3904 13 7 1.3099 -4.8528 -0.3980 14 6 2.2034 -5.8773 -0.5163 15 6 3.4399 -5.3345 -0.4510 16 7 3.3164 -4.0111 -0.3059 17 6 2.0400 -3.6969 -0.2713 18 1 -0.4850 0.8401 0.0004 19 1 -1.7670 -3.5651 -0.2554 20 1 -0.6343 -5.6881 -0.4896 21 1 1.9674 -6.9242 -0.6371 22 1 4.3711 -5.8782 -0.5107 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213763449.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:30 Heat of formation + Delta-G solvation = 90.178105 kcal Electronic energy + Delta-G solvation = -10962.960806 eV Core-core repulsion = 8905.227397 eV Total energy + Delta-G solvation = -2057.733409 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.32258 -36.60039 -34.21158 -32.14352 -29.46695 -27.98059 -26.15025 -22.38441 -21.61148 -20.34947 -17.95584 -16.99051 -15.28846 -15.15146 -14.56529 -14.06521 -13.38254 -13.11683 -12.47177 -12.08558 -11.69407 -11.42510 -11.07389 -10.82561 -10.36335 -10.21303 -9.30008 -9.01792 -7.91943 -7.78810 -6.98720 -6.81830 -4.82120 2.24216 2.82739 2.95012 3.00609 3.02155 3.71016 4.03815 4.04968 4.40680 5.40064 5.54363 5.72646 5.94823 6.06742 6.31937 6.48939 6.71612 6.87387 7.12710 7.50595 7.81436 7.93207 8.13491 8.36959 8.47080 9.13076 9.80489 9.96262 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.054461 B = 0.013816 C = 0.011072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.002554 B = 2026.214917 C = 2528.283802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.675 5.675 2 C 0.054 3.946 3 Si 0.924 3.076 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.344 4.344 8 H 0.105 0.895 9 C 0.287 3.713 10 N -0.537 5.537 11 C 0.137 3.863 12 C -0.235 4.235 13 N -0.314 5.314 14 C -0.117 4.117 15 C -0.024 4.024 16 N -0.488 5.488 17 C 0.152 3.848 18 H 0.283 0.717 19 H 0.136 0.864 20 H 0.124 0.876 21 H 0.160 0.840 22 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.584 -1.240 -0.357 1.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.294 5.294 2 C -0.177 4.177 3 Si 0.746 3.254 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.376 4.376 8 H 0.123 0.877 9 C 0.155 3.845 10 N -0.258 5.258 11 C -0.017 4.017 12 C -0.361 4.361 13 N 0.018 4.982 14 C -0.255 4.255 15 C -0.180 4.180 16 N -0.208 5.208 17 C -0.102 4.102 18 H 0.095 0.905 19 H 0.153 0.847 20 H 0.142 0.858 21 H 0.178 0.822 22 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.375 0.136 -0.207 0.449 hybrid contribution -0.064 -1.195 -0.237 1.220 sum 0.312 -1.059 -0.444 1.190 Atomic orbital electron populations 1.70107 1.07711 1.29232 1.22344 1.26352 0.95171 1.01985 0.94160 0.86007 0.80688 0.79028 0.79631 1.18878 1.19595 1.17689 1.19817 0.96125 0.88687 1.32948 0.87734 1.19280 0.87612 0.86941 0.90700 1.69417 1.04928 1.23618 1.27797 1.21838 0.99375 0.87549 0.92920 1.21234 0.80797 1.00403 1.33659 1.42140 1.06284 1.08017 1.41746 1.22178 0.89528 0.93443 1.20384 1.22126 0.96179 0.91027 1.08655 1.70089 1.15773 1.13400 1.21569 1.23631 0.87118 0.89705 1.09746 0.90531 0.84651 0.85800 0.82227 0.82095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -16.71 11.53 55.56 0.64 -16.07 14 2 C 0.05 1.28 5.49 -17.30 -0.10 1.18 14 3 Si 0.92 17.33 29.57 -169.99 -5.03 12.30 14 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 14 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 14 6 H -0.25 -4.71 7.11 56.52 0.40 -4.31 14 7 C -0.34 -9.03 9.17 -38.07 -0.35 -9.38 14 8 H 0.10 2.65 7.86 -52.48 -0.41 2.24 14 9 C 0.29 8.00 6.72 -82.67 -0.56 7.44 14 10 N -0.54 -14.67 8.04 -10.09 -0.08 -14.75 14 11 C 0.14 3.30 11.03 -18.11 -0.20 3.10 14 12 C -0.23 -5.48 11.02 -16.26 -0.18 -5.66 14 13 N -0.31 -7.82 2.96 -60.73 -0.18 -8.00 14 14 C -0.12 -2.52 11.81 -16.58 -0.20 -2.71 14 15 C -0.02 -0.53 11.84 -17.82 -0.21 -0.74 14 16 N -0.49 -12.61 11.28 -11.17 -0.13 -12.74 14 17 C 0.15 4.12 7.82 -154.14 -1.20 2.91 14 18 H 0.28 6.17 8.29 -40.82 -0.34 5.83 14 19 H 0.14 2.77 8.06 -52.49 -0.42 2.34 14 20 H 0.12 2.47 8.06 -52.49 -0.42 2.05 14 21 H 0.16 2.75 8.06 -52.49 -0.42 2.33 14 22 H 0.16 2.79 8.06 -52.49 -0.42 2.37 14 LS Contribution 207.96 15.07 3.13 3.13 Total: -1.00 -30.25 207.96 -5.87 -36.12 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -1.24 Total: 3.87 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.99 Total: -3.87 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.25 Total: -51.55 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -30.25 -5.87 -36.12 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213763449.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.296 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds