Wall clock time and date at job start Mon Mar 30 2020 02:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48494 * 109.47210 * 90.00360 * 3 2 1 5 5 H 1.48496 * 109.47240 * 210.00541 * 3 2 1 6 6 H 1.48507 * 109.46908 * 330.00376 * 3 2 1 7 7 C 1.40046 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00284 * 17.57437 * 7 2 1 9 9 C 1.40494 * 119.99853 * 197.58527 * 7 2 1 10 10 C 1.40689 * 120.96007 * 28.05459 * 9 7 2 11 11 C 1.39029 * 119.08213 * 179.97438 * 10 9 7 12 12 C 1.35793 * 121.12578 * 0.02562 * 11 10 9 13 13 N 1.35992 * 121.88490 * 359.95327 * 12 11 10 14 14 N 1.40269 * 133.17549 * 180.02562 * 13 12 11 15 15 C 1.31107 * 107.05056 * 180.02562 * 14 13 12 16 16 N 1.32821 * 109.52998 * 359.97438 * 15 14 13 17 17 C 1.32033 * 109.67820 * 359.76330 * 16 15 14 18 18 H 0.97004 * 119.99713 * 175.45896 * 1 2 3 19 19 H 1.07997 * 120.46044 * 0.02562 * 10 9 7 20 20 H 1.07998 * 119.43880 * 180.02562 * 11 10 9 21 21 H 1.08003 * 119.05566 * 179.97438 * 12 11 10 22 22 H 1.07997 * 125.23712 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 1.4000 5 1 3.5397 1.4402 -0.7001 6 1 1.4396 2.6527 -0.7000 7 6 2.0084 -1.2128 -0.0005 8 1 1.5063 -2.1262 -0.2833 9 6 3.3641 -1.2414 0.3671 10 6 3.8925 -0.2899 1.2586 11 6 5.2396 -0.3550 1.5960 12 6 6.0468 -1.3174 1.0801 13 7 5.5810 -2.2581 0.2155 14 7 6.1862 -3.3359 -0.4475 15 6 5.2561 -3.9162 -1.1665 16 7 4.1036 -3.2770 -1.0012 17 6 4.2699 -2.2699 -0.1637 18 1 -0.4850 -0.8375 -0.0665 19 1 3.2602 0.4799 1.6757 20 1 5.6512 0.3723 2.2802 21 1 7.0884 -1.3364 1.3648 22 1 5.4041 -4.7810 -1.7963 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213763714.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:36 Heat of formation + Delta-G solvation = 100.060097 kcal Electronic energy + Delta-G solvation = -11007.611962 eV Core-core repulsion = 8950.307068 eV Total energy + Delta-G solvation = -2057.304894 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.32334 -36.57948 -34.40453 -32.07357 -29.79910 -29.24669 -25.31741 -22.47630 -22.16481 -20.40836 -18.69916 -16.49709 -16.01925 -15.23087 -14.95900 -14.00536 -13.68881 -13.21408 -12.84209 -12.06854 -11.43334 -11.26271 -11.00424 -10.68595 -10.13219 -9.85321 -9.80494 -9.17301 -9.10506 -8.48081 -7.85910 -7.30327 -4.83800 1.96818 2.14737 3.02757 3.17077 3.32735 3.40341 3.72358 3.77564 4.12318 4.89929 5.00952 5.34515 5.75454 6.05444 6.14174 6.46978 6.91783 6.99801 7.08954 7.30548 7.42302 7.53570 7.82013 7.95861 8.07059 8.24228 9.06943 9.54954 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.049370 B = 0.015941 C = 0.012901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.007720 B = 1756.083563 C = 2169.813059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.039 3.961 3 Si 1.082 2.918 4 H -0.269 1.269 5 H -0.260 1.260 6 H -0.287 1.287 7 C -0.433 4.433 8 H 0.094 0.906 9 C 0.119 3.881 10 C -0.317 4.317 11 C -0.050 4.050 12 C -0.094 4.094 13 N -0.245 5.245 14 N -0.372 5.372 15 C 0.184 3.816 16 N -0.547 5.547 17 C 0.242 3.758 18 H 0.295 0.705 19 H 0.125 0.875 20 H 0.127 0.873 21 H 0.135 0.865 22 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.254 1.799 1.209 4.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.185 4.185 3 Si 0.906 3.094 4 H -0.196 1.196 5 H -0.184 1.184 6 H -0.214 1.214 7 C -0.460 4.460 8 H 0.112 0.888 9 C 0.112 3.888 10 C -0.343 4.343 11 C -0.071 4.071 12 C -0.219 4.219 13 N -0.019 5.019 14 N -0.207 5.207 15 C -0.116 4.116 16 N -0.277 5.277 17 C -0.016 4.016 18 H 0.107 0.893 19 H 0.142 0.858 20 H 0.144 0.856 21 H 0.153 0.847 22 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.375 2.937 1.037 5.370 hybrid contribution 0.110 -1.822 0.057 1.826 sum 4.485 1.115 1.094 4.749 Atomic orbital electron populations 1.70524 1.08036 1.33963 1.26858 1.27717 0.95598 1.04930 0.90303 0.83439 0.75521 0.72045 0.78395 1.19591 1.18415 1.21377 1.20793 0.93737 0.97623 1.33829 0.88778 1.17942 0.91570 0.87878 0.91410 1.20816 0.95941 1.08082 1.09426 1.20094 0.93551 0.95709 0.97773 1.20242 1.00017 0.96883 1.04780 1.46999 1.08393 1.18607 1.27872 1.78076 1.21598 1.02747 1.18304 1.25696 0.86764 1.00200 0.98947 1.70438 1.26424 1.09443 1.21398 1.23303 0.84646 0.97719 0.95898 0.89275 0.85807 0.85555 0.84731 0.77573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.91 13.65 55.55 0.76 -18.15 14 2 C 0.04 0.93 5.43 -17.31 -0.09 0.84 14 3 Si 1.08 22.26 24.90 -169.99 -4.23 18.03 14 4 H -0.27 -5.10 6.43 56.52 0.36 -4.74 14 5 H -0.26 -5.44 7.01 56.52 0.40 -5.05 14 6 H -0.29 -5.71 7.11 56.52 0.40 -5.31 14 7 C -0.43 -11.11 9.49 -38.05 -0.36 -11.47 14 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 14 9 C 0.12 3.00 5.32 -104.59 -0.56 2.45 14 10 C -0.32 -7.16 7.39 -38.36 -0.28 -7.45 14 11 C -0.05 -0.99 9.91 -40.16 -0.40 -1.39 14 12 C -0.09 -2.01 11.15 -16.58 -0.18 -2.19 14 13 N -0.24 -5.96 3.90 -10.67 -0.04 -6.00 14 14 N -0.37 -8.62 12.78 29.28 0.37 -8.25 14 15 C 0.18 4.00 12.99 -91.85 -1.19 2.81 14 16 N -0.55 -13.74 11.23 -12.41 -0.14 -13.88 14 17 C 0.24 6.25 7.87 -154.53 -1.22 5.04 14 18 H 0.30 6.98 8.73 -40.82 -0.36 6.63 14 19 H 0.12 2.64 4.37 -52.49 -0.23 2.42 14 20 H 0.13 1.98 8.06 -52.49 -0.42 1.56 14 21 H 0.14 2.47 8.06 -52.48 -0.42 2.05 14 22 H 0.21 3.37 8.06 -52.49 -0.42 2.95 14 LS Contribution 201.90 15.07 3.04 3.04 Total: -1.00 -28.32 201.90 -5.64 -33.96 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -1.12 Total: 2.62 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -4.29 Total: -11.38 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.95 Total: -46.27 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.23 Total: 18.03 kcal Total LS contribution 3.04 Total: 3.04 kcal Total: -28.32 -5.64 -33.96 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213763714.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.020 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds