Wall clock time and date at job start Mon Mar 30 2020 02:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48494 * 109.47210 * 90.00360 * 3 2 1 5 5 H 1.48496 * 109.47240 * 210.00541 * 3 2 1 6 6 H 1.48507 * 109.46908 * 330.00376 * 3 2 1 7 7 C 1.40046 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00284 * 17.57437 * 7 2 1 9 9 C 1.40494 * 119.99853 * 197.58527 * 7 2 1 10 10 C 1.40689 * 120.96007 * 28.05459 * 9 7 2 11 11 C 1.39029 * 119.08213 * 179.97438 * 10 9 7 12 12 C 1.35793 * 121.12578 * 0.02562 * 11 10 9 13 13 N 1.35992 * 121.88490 * 359.95327 * 12 11 10 14 14 N 1.40269 * 133.17549 * 180.02562 * 13 12 11 15 15 C 1.31107 * 107.05056 * 180.02562 * 14 13 12 16 16 N 1.32821 * 109.52998 * 359.97438 * 15 14 13 17 17 C 1.32033 * 109.67820 * 359.76330 * 16 15 14 18 18 H 0.97004 * 119.99713 * 175.45896 * 1 2 3 19 19 H 1.07997 * 120.46044 * 0.02562 * 10 9 7 20 20 H 1.07998 * 119.43880 * 180.02562 * 11 10 9 21 21 H 1.08003 * 119.05566 * 179.97438 * 12 11 10 22 22 H 1.07997 * 125.23712 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 1.4000 5 1 3.5397 1.4402 -0.7001 6 1 1.4396 2.6527 -0.7000 7 6 2.0084 -1.2128 -0.0005 8 1 1.5063 -2.1262 -0.2833 9 6 3.3641 -1.2414 0.3671 10 6 3.8925 -0.2899 1.2586 11 6 5.2396 -0.3550 1.5960 12 6 6.0468 -1.3174 1.0801 13 7 5.5810 -2.2581 0.2155 14 7 6.1862 -3.3359 -0.4475 15 6 5.2561 -3.9162 -1.1665 16 7 4.1036 -3.2770 -1.0012 17 6 4.2699 -2.2699 -0.1637 18 1 -0.4850 -0.8375 -0.0665 19 1 3.2602 0.4799 1.6757 20 1 5.6512 0.3723 2.2802 21 1 7.0884 -1.3364 1.3648 22 1 5.4041 -4.7810 -1.7963 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213763714.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:36 Heat of formation + Delta-G solvation = 82.814786 kcal Electronic energy + Delta-G solvation = -11008.359775 eV Core-core repulsion = 8950.307068 eV Total energy + Delta-G solvation = -2058.052706 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.11947 -38.35079 -36.18541 -33.88331 -31.55226 -31.04320 -27.12329 -24.27772 -23.91246 -22.19714 -20.48441 -18.31054 -17.77960 -16.86500 -16.78635 -15.66426 -15.45435 -14.97668 -14.51536 -13.79262 -13.11179 -12.99471 -12.74596 -12.42235 -11.89192 -11.59020 -11.54935 -10.93745 -10.87413 -10.21348 -9.69214 -9.11923 -6.70167 0.19549 0.33215 1.38809 1.53678 1.60421 1.80640 2.00304 2.11686 2.37606 3.09319 3.29773 3.61283 4.13885 4.37910 4.55276 4.77224 5.15642 5.18929 5.27486 5.54426 5.68386 5.77680 6.03156 6.07869 6.28418 6.45203 7.27835 7.72418 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.049370 B = 0.015941 C = 0.012901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.007720 B = 1756.083563 C = 2169.813059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.015 3.985 3 Si 1.107 2.893 4 H -0.233 1.233 5 H -0.266 1.266 6 H -0.278 1.278 7 C -0.476 4.476 8 H 0.056 0.944 9 C 0.097 3.903 10 C -0.302 4.302 11 C -0.047 4.047 12 C -0.084 4.084 13 N -0.256 5.256 14 N -0.384 5.384 15 C 0.192 3.808 16 N -0.583 5.583 17 C 0.206 3.794 18 H 0.287 0.713 19 H 0.140 0.860 20 H 0.184 0.816 21 H 0.171 0.829 22 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.718 3.118 2.403 7.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.204 4.204 3 Si 0.926 3.074 4 H -0.157 1.157 5 H -0.191 1.191 6 H -0.205 1.205 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.091 3.909 10 C -0.327 4.327 11 C -0.068 4.068 12 C -0.209 4.209 13 N -0.030 5.030 14 N -0.219 5.219 15 C -0.107 4.107 16 N -0.314 5.314 17 C -0.050 4.050 18 H 0.098 0.902 19 H 0.157 0.843 20 H 0.201 0.799 21 H 0.189 0.811 22 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 6.828 4.230 2.239 8.339 hybrid contribution -0.399 -2.330 -0.272 2.380 sum 6.430 1.900 1.967 6.987 Atomic orbital electron populations 1.70578 1.08443 1.33376 1.29551 1.28741 0.95679 1.06771 0.89172 0.83193 0.74351 0.69453 0.80423 1.15695 1.19091 1.20511 1.20592 0.94713 0.97116 1.37955 0.92604 1.18241 0.91433 0.89044 0.92216 1.21267 0.97508 1.06769 1.07192 1.20736 0.92174 0.96160 0.97757 1.21214 1.01998 0.95326 1.02404 1.47404 1.08060 1.19265 1.28254 1.78042 1.21928 1.02967 1.18959 1.26617 0.85361 1.00499 0.98228 1.70426 1.28168 1.10380 1.22423 1.23554 0.85613 0.98738 0.97115 0.90196 0.84291 0.79858 0.81128 0.73080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.45 13.65 21.85 0.30 -40.15 14 2 C 0.01 0.73 5.43 85.28 0.46 1.19 14 3 Si 1.11 43.19 24.90 68.60 1.71 44.90 14 4 H -0.23 -7.68 6.43 99.48 0.64 -7.04 14 5 H -0.27 -10.56 7.01 99.48 0.70 -9.86 14 6 H -0.28 -10.46 7.11 99.48 0.71 -9.75 14 7 C -0.48 -25.54 9.49 23.26 0.22 -25.32 14 8 H 0.06 3.29 8.06 -2.91 -0.02 3.26 14 9 C 0.10 4.91 5.32 -19.84 -0.11 4.81 14 10 C -0.30 -12.74 7.39 23.06 0.17 -12.56 14 11 C -0.05 -1.65 9.91 21.89 0.22 -1.43 14 12 C -0.08 -3.21 11.15 83.48 0.93 -2.28 14 13 N -0.26 -11.91 3.90 -187.67 -0.73 -12.64 14 14 N -0.38 -17.01 12.78 -61.28 -0.78 -17.80 14 15 C 0.19 8.10 12.99 180.78 2.35 10.45 14 16 N -0.58 -29.53 11.23 -193.19 -2.17 -31.70 14 17 C 0.21 10.60 7.87 136.09 1.07 11.67 14 18 H 0.29 14.47 8.73 -92.71 -0.81 13.66 14 19 H 0.14 5.41 4.37 -2.91 -0.01 5.40 14 20 H 0.18 4.35 8.06 -2.91 -0.02 4.32 14 21 H 0.17 5.26 8.06 -2.91 -0.02 5.24 14 22 H 0.25 7.60 8.06 -2.91 -0.02 7.57 14 Total: -1.00 -62.84 201.90 4.77 -58.07 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 1.13 Total: 12.80 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 5.32 Total: -13.48 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -3.39 Total: -102.29 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.71 Total: 44.90 kcal Total: -62.84 4.77 -58.07 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213763714.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.888 kcal (2) G-P(sol) polarization free energy of solvation -62.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds