Wall clock time and date at job start Mon Mar 30 2020 02:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30653 * 1 3 3 Si 1.86800 * 119.99961 * 2 1 4 4 H 1.48500 * 109.47157 * 240.00176 * 3 2 1 5 5 H 1.48504 * 109.47256 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47197 * 119.99833 * 3 2 1 7 7 C 1.40337 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.39827 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.39193 * 125.69632 * 359.97438 * 9 7 2 11 11 C 1.40838 * 107.42893 * 180.02562 * 10 9 7 12 12 N 1.33656 * 133.05513 * 179.97438 * 11 10 9 13 13 C 1.31712 * 119.72955 * 179.97438 * 12 11 10 14 14 C 1.38959 * 120.44866 * 359.97438 * 13 12 11 15 15 N 1.32076 * 120.64265 * 0.02562 * 14 13 12 16 16 C 1.32651 * 119.98339 * 359.70509 * 15 14 13 17 17 N 1.37560 * 132.66568 * 179.57592 * 16 15 14 18 18 H 0.97001 * 125.56260 * 0.73609 * 17 16 15 19 19 H 0.96998 * 119.99634 * 0.02562 * 1 2 3 20 20 H 1.07995 * 126.28915 * 0.02562 * 10 9 7 21 21 H 1.08002 * 119.77374 * 179.97438 * 13 12 11 22 22 H 1.08001 * 119.67800 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2755 2.7465 -0.0006 6 1 3.0943 1.6964 1.2125 7 6 2.0083 -1.2153 0.0005 8 1 3.0882 -1.2153 0.0001 9 6 1.3092 -2.4262 0.0005 10 6 -0.0759 -2.5644 0.0005 11 6 -0.3622 -3.9434 0.0011 12 7 -1.5040 -4.6382 0.0018 13 6 -1.4674 -5.9548 0.0018 14 6 -0.2503 -6.6254 0.0005 15 7 0.8877 -5.9550 -0.0002 16 6 0.8756 -4.6286 -0.0056 17 7 1.8786 -3.6872 -0.0001 18 1 2.8300 -3.8764 -0.0008 19 1 -0.4849 0.8401 -0.0004 20 1 -0.7983 -1.7617 0.0002 21 1 -2.3896 -6.5170 0.0028 22 1 -0.2348 -7.7053 0.0008 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213764934.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:57 Heat of formation + Delta-G solvation = 42.937994 kcal Electronic energy + Delta-G solvation = -10805.200067 eV Core-core repulsion = 8745.418173 eV Total energy + Delta-G solvation = -2059.781894 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.16992 -38.93850 -35.67769 -34.73759 -31.17083 -30.46086 -28.01045 -24.47405 -23.52623 -21.53655 -19.92627 -18.27831 -17.83592 -16.94679 -16.28840 -15.97214 -15.28651 -14.45148 -14.02199 -13.71344 -13.51705 -12.88611 -12.82489 -12.28760 -12.17209 -12.15033 -11.93308 -11.21926 -9.57114 -9.40441 -8.91719 -8.63877 -6.56355 0.30981 0.60237 1.43721 1.45265 1.59730 2.09393 2.13406 2.34904 3.15724 3.35568 3.76739 3.89885 4.08146 4.53095 4.63519 4.97431 5.28558 5.37971 5.55087 5.71281 6.07092 6.42854 6.52546 6.76516 6.81305 7.15430 7.42521 8.19976 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.092403 B = 0.010587 C = 0.009530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 302.946993 B = 2644.160438 C = 2937.264291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.030 3.970 3 Si 1.014 2.986 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.254 1.254 7 C -0.448 4.448 8 H 0.105 0.895 9 C 0.268 3.732 10 C -0.349 4.349 11 C 0.066 3.934 12 N -0.498 5.498 13 C 0.041 3.959 14 C -0.012 4.012 15 N -0.467 5.467 16 C 0.162 3.838 17 N -0.600 5.600 18 H 0.417 0.583 19 H 0.296 0.704 20 H 0.154 0.846 21 H 0.195 0.805 22 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.669 -1.105 -0.005 2.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.190 4.190 3 Si 0.833 3.167 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.178 1.178 7 C -0.481 4.481 8 H 0.123 0.877 9 C 0.158 3.842 10 C -0.374 4.374 11 C -0.066 4.066 12 N -0.214 5.214 13 C -0.128 4.128 14 C -0.176 4.176 15 N -0.186 5.186 16 C -0.077 4.077 17 N -0.215 5.215 18 H 0.255 0.745 19 H 0.108 0.892 20 H 0.172 0.828 21 H 0.211 0.789 22 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.529 -0.968 0.001 2.707 hybrid contribution 0.473 0.286 -0.006 0.553 sum 3.002 -0.682 -0.005 3.079 Atomic orbital electron populations 1.69743 1.09527 1.31238 1.31413 1.27072 0.95732 1.05070 0.91120 0.84755 0.78146 0.73386 0.80442 1.17806 1.19193 1.17796 1.19279 0.95961 0.88429 1.44477 0.87672 1.18419 0.91238 0.83044 0.91488 1.21542 0.95320 0.91953 1.28622 1.20161 0.88864 0.96648 1.00909 1.68069 1.29043 1.09005 1.15319 1.23963 1.00410 0.90190 0.98255 1.23624 0.87155 1.01491 1.05284 1.67025 1.32921 1.04961 1.13696 1.19385 0.89811 0.89227 1.09307 1.41707 1.06788 1.03649 1.69361 0.74490 0.89232 0.82843 0.78857 0.78465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.20 10.18 21.90 0.22 -38.98 14 2 C 0.03 1.35 5.50 85.38 0.47 1.82 14 3 Si 1.01 33.50 29.56 68.60 2.03 35.52 14 4 H -0.25 -8.03 7.11 99.48 0.71 -7.33 14 5 H -0.27 -8.50 7.11 99.48 0.71 -7.80 14 6 H -0.25 -8.03 7.11 99.48 0.71 -7.32 14 7 C -0.45 -21.64 9.45 23.17 0.22 -21.42 14 8 H 0.11 4.48 7.85 -2.91 -0.02 4.45 14 9 C 0.27 14.12 6.83 38.73 0.26 14.38 14 10 C -0.35 -20.03 9.80 23.14 0.23 -19.80 14 11 C 0.07 3.62 7.27 40.30 0.29 3.91 14 12 N -0.50 -25.07 10.56 -188.50 -1.99 -27.06 14 13 C 0.04 1.60 11.21 84.88 0.95 2.55 14 14 C -0.01 -0.46 11.21 84.83 0.95 0.49 14 15 N -0.47 -21.22 10.52 -191.50 -2.01 -23.23 14 16 C 0.16 8.26 8.38 134.06 1.12 9.38 14 17 N -0.60 -28.83 6.20 -184.76 -1.14 -29.97 14 18 H 0.42 16.90 8.96 -92.71 -0.83 16.07 14 19 H 0.30 13.01 8.29 -92.71 -0.77 12.24 14 20 H 0.15 9.25 5.59 -2.91 -0.02 9.23 14 21 H 0.19 5.49 8.06 -2.91 -0.02 5.47 14 22 H 0.20 5.27 8.06 -2.91 -0.02 5.25 14 Total: -1.00 -64.17 204.80 2.04 -62.14 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.44 Total: 30.28 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 4.50 Total: -8.70 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -4.93 Total: -119.25 kcal Atomic # 14 Polarization: 33.50 SS G_CDS: 2.03 Total: 35.52 kcal Total: -64.17 2.04 -62.14 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213764934.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.077 kcal (2) G-P(sol) polarization free energy of solvation -64.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds