Wall clock time and date at job start Mon Mar 30 2020 02:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31033 * 1 3 3 Si 1.86799 * 120.00294 * 2 1 4 4 H 1.48494 * 109.47363 * 270.00315 * 3 2 1 5 5 H 1.48497 * 109.46944 * 30.00604 * 3 2 1 6 6 H 1.48509 * 109.47169 * 150.00219 * 3 2 1 7 7 C 1.39781 * 119.99496 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99508 * 179.97438 * 7 2 1 9 9 C 1.40941 * 120.00351 * 359.97438 * 7 2 1 10 10 C 1.38870 * 126.93797 * 359.97438 * 9 7 2 11 11 N 1.35715 * 109.31309 * 179.97438 * 10 9 7 12 12 H 0.97006 * 124.66135 * 179.73609 * 11 10 9 13 13 C 1.37805 * 110.67777 * 0.02562 * 11 10 9 14 14 N 1.32732 * 132.80934 * 179.97438 * 13 11 10 15 15 C 1.31997 * 119.94832 * 179.97438 * 14 13 11 16 16 C 1.38647 * 120.59826 * 0.03570 * 15 14 13 17 17 N 1.32011 * 120.25668 * 0.02562 * 16 15 14 18 18 C 1.32591 * 119.69660 * 359.97438 * 17 16 15 19 19 H 0.97003 * 119.99252 * 359.97438 * 1 2 3 20 20 H 1.07998 * 125.34790 * 0.02562 * 10 9 7 21 21 H 1.07992 * 119.69667 * 180.02562 * 15 14 13 22 22 H 1.08000 * 119.87491 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 2.4919 2.0464 -1.4000 5 1 1.4419 2.6526 0.7002 6 1 3.5420 1.4400 0.7000 7 6 2.0091 -1.2106 -0.0005 8 1 3.0891 -1.2106 -0.0010 9 6 1.3044 -2.4312 -0.0005 10 6 -0.0741 -2.5989 0.0005 11 7 -0.3650 -3.9245 -0.0005 12 1 -1.2626 -4.2923 0.0036 13 6 0.7900 -4.6761 -0.0015 14 7 1.0149 -5.9842 -0.0022 15 6 2.2537 -6.4399 -0.0037 16 6 3.3280 -5.5634 -0.0038 17 7 3.1226 -4.2594 -0.0019 18 6 1.8827 -3.7898 -0.0004 19 1 -0.4849 0.8401 0.0004 20 1 -0.8008 -1.7999 0.0010 21 1 2.4320 -7.5050 -0.0047 22 1 4.3368 -5.9490 -0.0046 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213765033.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:00 Heat of formation + Delta-G solvation = 70.435375 kcal Electronic energy + Delta-G solvation = -10842.204940 eV Core-core repulsion = 8783.615422 eV Total energy + Delta-G solvation = -2058.589518 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.45294 -37.12694 -33.85670 -32.90910 -29.53482 -28.42511 -25.21152 -23.28518 -22.03711 -19.73214 -17.70699 -16.20468 -16.03103 -15.42711 -14.45656 -14.26022 -13.89022 -12.69804 -12.63823 -11.59658 -11.47803 -11.24854 -11.15601 -10.55262 -10.46592 -10.27034 -9.93456 -9.32758 -7.91624 -7.56129 -7.09119 -6.64832 -4.16532 1.97973 2.16719 3.05588 3.13360 3.19585 3.92406 4.02795 4.04834 4.79657 5.24986 5.37381 5.44605 5.73882 5.98111 6.16943 6.66127 6.91642 7.12470 7.51367 7.67478 8.05090 8.23388 8.40247 8.78520 8.92492 9.01631 9.07045 10.32036 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.064861 B = 0.012089 C = 0.010227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.590633 B = 2315.546554 C = 2737.295805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.054 3.946 3 Si 0.924 3.076 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.401 4.401 8 H 0.081 0.919 9 C 0.038 3.962 10 C -0.081 4.081 11 N -0.559 5.559 12 H 0.401 0.599 13 C 0.211 3.789 14 N -0.479 5.479 15 C 0.058 3.942 16 C -0.024 4.024 17 N -0.398 5.398 18 C 0.031 3.969 19 H 0.278 0.722 20 H 0.206 0.794 21 H 0.153 0.847 22 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 -3.559 0.007 3.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.157 4.157 3 Si 0.750 3.250 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.434 4.434 8 H 0.099 0.901 9 C 0.032 3.968 10 C -0.207 4.207 11 N -0.163 5.163 12 H 0.236 0.764 13 C -0.030 4.030 14 N -0.200 5.200 15 C -0.111 4.111 16 C -0.192 4.192 17 N -0.112 5.112 18 C -0.112 4.112 19 H 0.089 0.911 20 H 0.222 0.778 21 H 0.170 0.830 22 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.125 -3.209 0.010 3.212 hybrid contribution -0.040 0.347 -0.007 0.349 sum 0.085 -2.862 0.003 2.863 Atomic orbital electron populations 1.69369 1.07353 1.28499 1.40540 1.25754 0.94909 1.01100 0.93934 0.86022 0.80023 0.80013 0.78959 1.19729 1.20458 1.18765 1.18895 0.94645 0.88568 1.41265 0.90092 1.17961 0.90064 0.88199 1.00600 1.23542 0.97902 0.81201 1.18087 1.41329 1.04930 1.06179 1.63816 0.76415 1.19237 0.89130 0.89464 1.05156 1.67073 1.24087 1.13047 1.15762 1.22973 0.87808 1.00188 1.00092 1.23039 0.99616 0.89580 1.06974 1.67539 1.22907 1.14239 1.06490 1.21065 0.87640 0.96470 1.06064 0.91136 0.77848 0.83021 0.83239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.66 10.33 55.54 0.57 -20.09 14 2 C 0.05 1.36 5.49 -17.32 -0.10 1.26 14 3 Si 0.92 19.20 29.56 -169.99 -5.02 14.18 14 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 14 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 14 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 14 7 C -0.40 -10.94 9.43 -37.98 -0.36 -11.30 14 8 H 0.08 2.20 7.84 -52.49 -0.41 1.79 14 9 C 0.04 1.04 6.10 -104.80 -0.64 0.40 14 10 C -0.08 -2.01 10.89 -15.60 -0.17 -2.18 14 11 N -0.56 -12.44 5.97 -11.25 -0.07 -12.51 14 12 H 0.40 7.36 8.96 -40.82 -0.37 7.00 14 13 C 0.21 5.08 8.39 -155.30 -1.30 3.77 14 14 N -0.48 -10.49 10.52 -12.11 -0.13 -10.61 14 15 C 0.06 1.09 11.20 -17.33 -0.19 0.90 14 16 C -0.02 -0.47 11.21 -17.32 -0.19 -0.66 14 17 N -0.40 -9.74 10.53 -9.51 -0.10 -9.84 14 18 C 0.03 0.81 7.48 -82.77 -0.62 0.19 14 19 H 0.28 6.34 8.30 -40.82 -0.34 6.00 14 20 H 0.21 5.05 5.68 -52.49 -0.30 4.75 14 21 H 0.15 2.13 8.06 -52.49 -0.42 1.70 14 22 H 0.15 2.30 8.06 -52.49 -0.42 1.88 14 LS Contribution 205.33 15.07 3.09 3.09 Total: -1.00 -29.50 205.33 -6.28 -35.78 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -1.06 Total: 7.62 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -3.57 Total: -7.62 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.28 Total: -53.05 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 3.09 Total: 3.09 kcal Total: -29.50 -6.28 -35.78 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213765033.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.219 kcal (2) G-P(sol) polarization free energy of solvation -29.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds