Wall clock time and date at job start Mon Mar 30 2020 02:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86806 * 119.99836 * 2 1 4 4 H 1.48499 * 109.46799 * 275.40687 * 3 2 1 5 5 H 1.48503 * 109.46972 * 35.40572 * 3 2 1 6 6 H 1.48500 * 109.47263 * 155.40919 * 3 2 1 7 7 C 1.39937 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99380 * 341.80999 * 7 2 1 9 9 C 1.41144 * 120.00110 * 161.80687 * 7 2 1 10 10 C 1.41175 * 120.53873 * 330.31287 * 9 7 2 11 11 N 1.30933 * 121.05296 * 179.97438 * 10 9 7 12 12 C 1.33562 * 121.88619 * 359.97438 * 11 10 9 13 13 N 1.34807 * 132.89780 * 180.02562 * 12 11 10 14 14 C 1.30388 * 109.98636 * 179.97438 * 13 12 11 15 15 N 1.35827 * 110.14008 * 359.97438 * 14 13 12 16 16 H 0.96992 * 126.48550 * 180.02562 * 15 14 13 17 17 C 1.38241 * 107.03190 * 359.97438 * 15 14 13 18 18 C 1.38129 * 134.15504 * 179.97438 * 17 15 14 19 19 H 0.97002 * 120.00397 * 0.02562 * 1 2 3 20 20 H 1.07997 * 119.47398 * 359.97438 * 10 9 7 21 21 H 1.07995 * 124.93308 * 179.97438 * 14 13 12 22 22 H 1.08000 * 120.98342 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3757 2.1124 -1.3939 5 1 1.5017 2.6170 0.8112 6 1 3.5925 1.4100 0.5826 7 6 2.0083 -1.2118 0.0005 8 1 1.5087 -2.1236 0.2929 9 6 3.3668 -1.2425 -0.3811 10 6 3.8715 -0.3093 -1.3125 11 7 5.1300 -0.3283 -1.6732 12 6 5.9913 -1.2231 -1.1820 13 7 7.3049 -1.4429 -1.3906 14 6 7.7086 -2.4502 -0.6678 15 7 6.6748 -2.9483 0.0589 16 1 6.7107 -3.6964 0.6752 17 6 5.5620 -2.1865 -0.2451 18 6 4.2429 -2.2039 0.1644 19 1 -0.4851 0.8400 -0.0004 20 1 3.2090 0.4320 -1.7341 21 1 8.7182 -2.8330 -0.6496 22 1 3.8924 -2.9332 0.8797 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213765652.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:50 Heat of formation + Delta-G solvation = 51.341260 kcal Electronic energy + Delta-G solvation = -10887.840071 eV Core-core repulsion = 8828.422570 eV Total energy + Delta-G solvation = -2059.417501 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.76801 -39.04837 -35.72007 -34.12713 -32.25702 -30.98112 -27.10530 -24.62098 -23.12246 -22.20694 -20.13923 -18.64327 -17.71575 -17.57308 -16.31906 -16.15718 -15.27025 -14.84356 -14.47367 -13.93563 -13.75038 -13.00340 -12.89120 -12.78754 -11.92817 -11.76675 -11.42936 -11.14717 -9.89638 -9.57324 -9.34276 -9.01979 -6.55531 0.22949 0.63032 1.25951 1.32918 1.43801 1.96788 2.05753 2.23530 2.65768 3.21038 3.40608 4.00020 4.19240 4.45509 4.55598 4.67016 5.08288 5.08784 5.35277 5.55932 5.85854 6.06863 6.40021 6.60710 6.77150 6.99337 7.46885 8.04380 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.069969 B = 0.012948 C = 0.011568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.079683 B = 2161.979406 C = 2419.801833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.061 3.939 3 Si 0.949 3.051 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.270 1.270 7 C -0.452 4.452 8 H 0.077 0.923 9 C 0.041 3.959 10 C 0.019 3.981 11 N -0.458 5.458 12 C 0.103 3.897 13 N -0.531 5.531 14 C 0.267 3.733 15 N -0.596 5.596 16 H 0.439 0.561 17 C 0.049 3.951 18 C -0.212 4.212 19 H 0.302 0.698 20 H 0.144 0.856 21 H 0.273 0.727 22 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.301 -3.655 2.952 9.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.158 4.158 3 Si 0.772 3.228 4 H -0.178 1.178 5 H -0.186 1.186 6 H -0.195 1.195 7 C -0.481 4.481 8 H 0.095 0.905 9 C 0.035 3.965 10 C -0.154 4.154 11 N -0.168 5.168 12 C -0.133 4.133 13 N -0.253 5.253 14 C -0.022 4.022 15 N -0.213 5.213 16 H 0.281 0.719 17 C -0.064 4.064 18 C -0.243 4.243 19 H 0.113 0.887 20 H 0.161 0.839 21 H 0.289 0.711 22 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.867 -2.426 1.750 9.358 hybrid contribution -0.946 -0.765 1.336 1.807 sum 7.921 -3.190 3.086 9.080 Atomic orbital electron populations 1.69662 1.08746 1.32168 1.33877 1.26623 0.95256 1.03480 0.90443 0.85766 0.79079 0.77706 0.80203 1.17763 1.18614 1.19518 1.19278 0.92921 0.96327 1.39563 0.90503 1.18473 0.93884 0.92675 0.91516 1.22767 0.90656 1.02282 0.99721 1.66187 1.03339 1.22252 1.24977 1.19354 0.92370 0.98603 1.03023 1.69607 1.09449 1.19189 1.27052 1.26233 0.95922 0.90946 0.89112 1.42803 1.07064 1.30652 1.40808 0.71884 1.19627 0.90785 0.95861 1.00080 1.20229 0.89111 1.07336 1.07578 0.88720 0.83913 0.71128 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.46 13.93 21.83 0.30 -41.16 14 2 C 0.06 3.06 5.41 85.25 0.46 3.52 14 3 Si 0.95 41.29 24.52 68.60 1.68 42.97 14 4 H -0.25 -10.58 6.71 99.48 0.67 -9.91 14 5 H -0.26 -10.32 7.11 99.48 0.71 -9.61 14 6 H -0.27 -12.78 6.86 99.48 0.68 -12.10 14 7 C -0.45 -23.76 9.58 23.40 0.22 -23.54 14 8 H 0.08 4.22 8.06 -2.91 -0.02 4.19 14 9 C 0.04 2.08 5.12 -21.16 -0.11 1.98 14 10 C 0.02 0.96 8.34 85.55 0.71 1.67 14 11 N -0.46 -24.31 10.38 -192.22 -2.00 -26.31 14 12 C 0.10 5.05 8.35 134.57 1.12 6.17 14 13 N -0.53 -22.14 11.22 -196.85 -2.21 -24.35 14 14 C 0.27 7.46 12.97 180.04 2.33 9.79 14 15 N -0.60 -17.39 6.25 -191.04 -1.19 -18.59 14 16 H 0.44 8.49 8.96 -92.71 -0.83 7.65 14 17 C 0.05 2.10 7.29 38.80 0.28 2.38 14 18 C -0.21 -9.69 9.95 22.93 0.23 -9.46 14 19 H 0.30 13.56 8.30 -92.71 -0.77 12.79 14 20 H 0.14 7.09 4.71 -2.91 -0.01 7.08 14 21 H 0.27 3.54 8.06 -2.91 -0.02 3.52 14 22 H 0.13 5.26 8.06 -2.91 -0.02 5.24 14 Total: -1.00 -68.28 200.12 2.22 -66.06 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.37 Total: 8.85 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 5.26 Total: -7.48 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -5.09 Total: -110.40 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.68 Total: 42.97 kcal Total: -68.28 2.22 -66.06 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213765652.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.397 kcal (2) G-P(sol) polarization free energy of solvation -68.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds