Wall clock time and date at job start Mon Mar 30 2020 02:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86808 * 119.99948 * 2 1 4 4 H 1.48496 * 109.47262 * 83.32095 * 3 2 1 5 5 H 1.48499 * 109.47019 * 203.32001 * 3 2 1 6 6 H 1.48498 * 109.47012 * 323.31862 * 3 2 1 7 7 C 1.39952 * 120.00549 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99603 * 23.34913 * 7 2 1 9 9 C 1.41404 * 120.00237 * 203.35458 * 7 2 1 10 10 C 1.41111 * 120.66028 * 205.76584 * 9 7 2 11 11 C 1.38010 * 118.19587 * 180.02562 * 10 9 7 12 12 C 1.38625 * 119.42667 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.34298 * 180.02562 * 12 11 10 14 14 C 1.53000 * 117.49765 * 343.74406 * 13 12 11 15 15 C 1.52998 * 117.49538 * 275.08568 * 13 12 11 16 16 N 1.32057 * 121.31671 * 359.97438 * 12 11 10 17 17 C 1.31503 * 121.98051 * 359.70182 * 16 12 11 18 18 H 0.97001 * 120.00045 * 173.09703 * 1 2 3 19 19 H 1.07996 * 120.90001 * 359.97438 * 10 9 7 20 20 H 1.07999 * 120.28837 * 179.97438 * 11 10 9 21 21 H 1.08999 * 115.55087 * 129.41253 * 13 12 11 22 22 H 1.09006 * 117.49569 * 0.02562 * 14 13 12 23 23 H 1.08995 * 117.50169 * 145.01730 * 14 13 12 24 24 H 1.08999 * 117.49922 * 214.97944 * 15 13 12 25 25 H 1.08999 * 117.49896 * 359.97438 * 15 13 12 26 26 H 1.08000 * 119.79855 * 180.31085 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3487 2.1279 1.3905 5 1 3.6031 1.4036 -0.5542 6 1 1.5173 2.6079 -0.8363 7 6 2.0080 -1.2120 0.0005 8 1 1.5344 -2.1091 -0.3698 9 6 3.3352 -1.2618 0.4860 10 6 4.2306 -2.2537 0.0324 11 6 5.5137 -2.2554 0.5404 12 6 5.8794 -1.2944 1.4702 13 6 7.2813 -1.2977 2.0233 14 6 8.1139 -2.5667 1.8301 15 6 7.5681 -2.2125 3.2157 16 7 5.0242 -0.3756 1.8802 17 6 3.7909 -0.3203 1.4272 18 1 -0.4850 -0.8340 -0.1010 19 1 3.9198 -2.9919 -0.6920 20 1 6.2266 -2.9995 0.2170 21 1 7.8040 -0.3420 1.9849 22 1 7.6479 -3.3990 1.3026 23 1 9.1845 -2.4459 1.6650 24 1 8.2798 -1.8588 3.9616 25 1 6.7427 -2.8116 3.6003 26 1 3.1223 0.4495 1.7832 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213771029.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:23 Heat of formation + Delta-G solvation = 37.353839 kcal Electronic energy + Delta-G solvation = -10955.201094 eV Core-core repulsion = 8998.717396 eV Total energy + Delta-G solvation = -1956.483698 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 189.085 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.91661 -36.36067 -33.91694 -31.23265 -30.06941 -25.62513 -22.76440 -22.01619 -21.63900 -19.82014 -18.37923 -16.03991 -15.45049 -14.43194 -14.20041 -13.99134 -13.44682 -12.75667 -12.28523 -11.96424 -11.43156 -11.22897 -10.95079 -10.62406 -10.25643 -10.17300 -9.91661 -9.82031 -9.17594 -8.55480 -8.08520 -7.82011 -7.38688 -4.66815 2.42986 2.61662 3.16954 3.31609 3.49241 3.92073 4.21288 4.50898 5.06033 5.29880 5.34857 5.55521 5.80389 5.92768 5.96748 6.17574 6.30918 6.32317 6.47742 6.62845 6.73061 6.95313 7.33401 7.40339 7.48838 7.71770 8.14642 8.31623 8.56715 9.43058 9.84299 Molecular weight = 189.08amu Principal moments of inertia in cm(-1) A = 0.067926 B = 0.011116 C = 0.010206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.112581 B = 2518.286028 C = 2742.912039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.044 3.956 3 Si 1.068 2.932 4 H -0.270 1.270 5 H -0.264 1.264 6 H -0.285 1.285 7 C -0.503 4.503 8 H 0.079 0.921 9 C 0.047 3.953 10 C -0.191 4.191 11 C -0.119 4.119 12 C 0.003 3.997 13 C -0.067 4.067 14 C -0.184 4.184 15 C -0.177 4.177 16 N -0.446 5.446 17 C -0.030 4.030 18 H 0.289 0.711 19 H 0.106 0.894 20 H 0.105 0.895 21 H 0.101 0.899 22 H 0.094 0.906 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.327 -1.655 1.069 8.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.177 4.177 3 Si 0.893 3.107 4 H -0.197 1.197 5 H -0.188 1.188 6 H -0.212 1.212 7 C -0.531 4.531 8 H 0.097 0.903 9 C 0.042 3.958 10 C -0.216 4.216 11 C -0.139 4.139 12 C -0.133 4.133 13 C -0.086 4.086 14 C -0.221 4.221 15 C -0.214 4.214 16 N -0.153 5.153 17 C -0.193 4.193 18 H 0.101 0.899 19 H 0.124 0.876 20 H 0.123 0.877 21 H 0.119 0.881 22 H 0.112 0.888 23 H 0.108 0.892 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.288 0.528 1.742 8.486 hybrid contribution -0.346 -2.515 -0.751 2.647 sum 7.942 -1.987 0.991 8.246 Atomic orbital electron populations 1.70523 1.08091 1.33694 1.29954 1.27335 0.95558 1.04615 0.90194 0.83660 0.75846 0.72888 0.78317 1.19655 1.18808 1.21165 1.20610 0.97387 0.97551 1.37582 0.90310 1.18652 0.93598 0.92287 0.91214 1.21328 0.93295 1.03279 1.03746 1.21377 0.96360 0.98421 0.97722 1.19365 0.93846 0.97482 1.02635 1.20420 0.93091 0.94185 1.00924 1.22977 0.98898 0.99905 1.00344 1.22906 1.02942 1.04439 0.91155 1.66646 1.03198 1.21727 1.23720 1.22453 0.92871 1.03162 1.00806 0.89937 0.87587 0.87700 0.88056 0.88806 0.89189 0.89379 0.89223 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.00 13.65 55.55 0.76 -20.24 15 2 C 0.04 1.15 5.36 -17.34 -0.09 1.06 15 3 Si 1.07 24.23 24.96 -169.99 -4.24 19.99 15 4 H -0.27 -5.91 6.68 56.52 0.38 -5.53 15 5 H -0.26 -6.11 6.97 56.52 0.39 -5.72 15 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 7 C -0.50 -13.38 9.44 -37.74 -0.36 -13.74 15 8 H 0.08 2.13 8.06 -52.49 -0.42 1.71 15 9 C 0.05 1.23 5.18 -106.67 -0.55 0.68 15 10 C -0.19 -4.54 9.94 -38.58 -0.38 -4.92 15 11 C -0.12 -2.59 9.33 -39.52 -0.37 -2.96 15 12 C 0.00 0.07 6.47 -82.35 -0.53 -0.46 15 13 C -0.07 -1.22 6.21 -91.77 -0.57 -1.79 15 14 C -0.18 -2.68 9.79 -26.69 -0.26 -2.94 15 15 C -0.18 -2.74 10.24 -26.69 -0.27 -3.01 15 16 N -0.45 -11.11 10.24 -8.78 -0.09 -11.20 15 17 C -0.03 -0.78 8.54 -16.76 -0.14 -0.92 15 18 H 0.29 7.32 8.73 -40.82 -0.36 6.96 15 19 H 0.11 2.33 8.06 -52.49 -0.42 1.90 15 20 H 0.11 1.94 6.21 -52.49 -0.33 1.61 15 21 H 0.10 1.75 8.14 -51.93 -0.42 1.33 15 22 H 0.09 1.36 6.36 -51.93 -0.33 1.03 15 23 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.09 1.47 8.14 -51.93 -0.42 1.05 15 26 H 0.13 3.33 4.59 -52.49 -0.24 3.09 15 LS Contribution 224.68 15.07 3.39 3.39 Total: -1.00 -27.61 224.68 -6.34 -33.95 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -2.62 Total: 3.12 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -3.53 Total: -29.01 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.67 Total: -31.43 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -4.24 Total: 19.99 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -27.61 -6.34 -33.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213771029.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.305 kcal (2) G-P(sol) polarization free energy of solvation -27.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds