Wall clock time and date at job start Mon Mar 30 2020 02:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86808 * 119.99948 * 2 1 4 4 H 1.48496 * 109.47262 * 83.32095 * 3 2 1 5 5 H 1.48499 * 109.47019 * 203.32001 * 3 2 1 6 6 H 1.48498 * 109.47012 * 323.31862 * 3 2 1 7 7 C 1.39952 * 120.00549 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99603 * 23.34913 * 7 2 1 9 9 C 1.41404 * 120.00237 * 203.35458 * 7 2 1 10 10 C 1.41111 * 120.66028 * 205.76584 * 9 7 2 11 11 C 1.38010 * 118.19587 * 180.02562 * 10 9 7 12 12 C 1.38625 * 119.42667 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.34298 * 180.02562 * 12 11 10 14 14 C 1.53000 * 117.49765 * 343.74406 * 13 12 11 15 15 C 1.52998 * 117.49538 * 275.08568 * 13 12 11 16 16 N 1.32057 * 121.31671 * 359.97438 * 12 11 10 17 17 C 1.31503 * 121.98051 * 359.70182 * 16 12 11 18 18 H 0.97001 * 120.00045 * 173.09703 * 1 2 3 19 19 H 1.07996 * 120.90001 * 359.97438 * 10 9 7 20 20 H 1.07999 * 120.28837 * 179.97438 * 11 10 9 21 21 H 1.08999 * 115.55087 * 129.41253 * 13 12 11 22 22 H 1.09006 * 117.49569 * 0.02562 * 14 13 12 23 23 H 1.08995 * 117.50169 * 145.01730 * 14 13 12 24 24 H 1.08999 * 117.49922 * 214.97944 * 15 13 12 25 25 H 1.08999 * 117.49896 * 359.97438 * 15 13 12 26 26 H 1.08000 * 119.79855 * 180.31085 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3487 2.1279 1.3905 5 1 3.6031 1.4036 -0.5542 6 1 1.5173 2.6079 -0.8363 7 6 2.0080 -1.2120 0.0005 8 1 1.5344 -2.1091 -0.3698 9 6 3.3352 -1.2618 0.4860 10 6 4.2306 -2.2537 0.0324 11 6 5.5137 -2.2554 0.5404 12 6 5.8794 -1.2944 1.4702 13 6 7.2813 -1.2977 2.0233 14 6 8.1139 -2.5667 1.8301 15 6 7.5681 -2.2125 3.2157 16 7 5.0242 -0.3756 1.8802 17 6 3.7909 -0.3203 1.4272 18 1 -0.4850 -0.8340 -0.1010 19 1 3.9198 -2.9919 -0.6920 20 1 6.2266 -2.9995 0.2170 21 1 7.8040 -0.3420 1.9849 22 1 7.6479 -3.3990 1.3026 23 1 9.1845 -2.4459 1.6650 24 1 8.2798 -1.8588 3.9616 25 1 6.7427 -2.8116 3.6003 26 1 3.1223 0.4495 1.7832 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213771029.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:23 Heat of formation + Delta-G solvation = 20.758097 kcal Electronic energy + Delta-G solvation = -10955.920739 eV Core-core repulsion = 8998.717396 eV Total energy + Delta-G solvation = -1957.203343 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 189.085 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.71208 -37.80545 -35.81123 -33.13457 -31.90221 -27.44881 -24.48444 -23.73307 -22.95948 -21.50081 -20.31396 -17.63892 -17.22188 -16.09361 -15.97944 -15.61521 -15.19382 -14.53642 -14.11172 -13.77970 -13.12999 -12.89363 -12.43166 -12.20681 -12.06190 -11.80246 -11.43916 -11.20262 -11.01896 -10.44615 -9.96110 -9.70735 -9.34587 -6.67889 0.55855 0.71868 1.33160 1.49105 1.69363 2.08094 2.50673 3.00282 3.40586 3.67028 4.07596 4.14369 4.23629 4.33827 4.56676 4.59416 4.82380 4.88246 4.98925 5.05745 5.24025 5.33885 5.37872 5.53612 5.60797 5.83747 6.12713 6.40360 6.60855 7.53777 7.86240 Molecular weight = 189.08amu Principal moments of inertia in cm(-1) A = 0.067926 B = 0.011116 C = 0.010206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.112581 B = 2518.286028 C = 2742.912039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.020 3.980 3 Si 1.098 2.902 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.195 4.195 11 C -0.119 4.119 12 C 0.015 3.985 13 C -0.104 4.104 14 C -0.155 4.155 15 C -0.169 4.169 16 N -0.467 5.467 17 C -0.048 4.048 18 H 0.284 0.716 19 H 0.120 0.880 20 H 0.146 0.854 21 H 0.109 0.891 22 H 0.097 0.903 23 H 0.122 0.878 24 H 0.114 0.886 25 H 0.076 0.924 26 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.197 -2.101 1.450 11.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.197 4.197 3 Si 0.919 3.081 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.077 0.923 9 C 0.021 3.979 10 C -0.221 4.221 11 C -0.138 4.138 12 C -0.123 4.123 13 C -0.123 4.123 14 C -0.192 4.192 15 C -0.207 4.207 16 N -0.175 5.175 17 C -0.208 4.208 18 H 0.095 0.905 19 H 0.138 0.862 20 H 0.164 0.836 21 H 0.127 0.873 22 H 0.115 0.885 23 H 0.141 0.859 24 H 0.132 0.868 25 H 0.095 0.905 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.125 0.085 2.126 11.327 hybrid contribution -0.990 -2.517 -0.809 2.823 sum 10.135 -2.432 1.318 10.506 Atomic orbital electron populations 1.70568 1.08397 1.33424 1.32158 1.28146 0.95700 1.06441 0.89453 0.83260 0.74586 0.71167 0.79067 1.18588 1.19920 1.19231 1.20562 0.98375 0.97393 1.39998 0.92279 1.18825 0.93835 0.93466 0.91771 1.21675 0.93988 1.02726 1.03697 1.21802 0.96177 0.98986 0.96837 1.20282 0.95326 0.95719 1.00982 1.20515 0.91174 0.96463 1.04133 1.23132 1.00167 0.97138 0.98812 1.22979 1.03048 1.02773 0.91881 1.66750 1.03211 1.23153 1.24374 1.22475 0.93556 1.03494 1.01245 0.90453 0.86240 0.83638 0.87314 0.88459 0.85937 0.86777 0.90547 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.38 13.65 21.83 0.30 -44.08 15 2 C 0.02 1.04 5.36 85.26 0.46 1.49 15 3 Si 1.10 49.51 24.96 68.60 1.71 51.23 15 4 H -0.26 -11.19 6.68 99.48 0.66 -10.52 15 5 H -0.27 -12.68 6.97 99.48 0.69 -11.99 15 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 7 C -0.53 -29.40 9.44 23.47 0.22 -29.18 15 8 H 0.06 3.36 8.06 -2.91 -0.02 3.34 15 9 C 0.03 1.34 5.18 -21.19 -0.11 1.23 15 10 C -0.19 -9.06 9.94 22.92 0.23 -8.83 15 11 C -0.12 -4.83 9.33 22.31 0.21 -4.62 15 12 C 0.02 0.65 6.47 42.62 0.28 0.92 15 13 C -0.10 -3.37 6.21 -11.54 -0.07 -3.44 15 14 C -0.16 -3.70 9.79 30.62 0.30 -3.40 15 15 C -0.17 -4.53 10.24 30.62 0.31 -4.22 15 16 N -0.47 -22.81 10.24 -181.70 -1.86 -24.67 15 17 C -0.05 -2.47 8.54 85.35 0.73 -1.74 15 18 H 0.28 15.02 8.73 -92.71 -0.81 14.21 15 19 H 0.12 5.13 8.06 -2.91 -0.02 5.10 15 20 H 0.15 4.70 6.21 -2.91 -0.02 4.68 15 21 H 0.11 3.38 8.14 -2.39 -0.02 3.36 15 22 H 0.10 2.27 6.36 -2.38 -0.02 2.26 15 23 H 0.12 2.20 8.14 -2.39 -0.02 2.18 15 24 H 0.11 2.48 8.14 -2.39 -0.02 2.46 15 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 26 H 0.13 6.57 4.59 -2.91 -0.01 6.56 15 Total: -1.00 -59.60 224.68 3.78 -55.82 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 1.08 Total: 13.49 kcal Atomic # 6 Polarization: -54.34 SS G_CDS: 2.55 Total: -51.79 kcal Atomic # 7 Polarization: -67.19 SS G_CDS: -1.56 Total: -68.75 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 1.71 Total: 51.23 kcal Total: -59.60 3.78 -55.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213771029.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.576 kcal (2) G-P(sol) polarization free energy of solvation -59.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds