Wall clock time and date at job start Mon Mar 30 2020 02:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30703 * 1 3 3 Si 1.86796 * 119.99910 * 2 1 4 4 H 1.48506 * 109.47067 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47387 * 300.00056 * 3 2 1 6 6 H 1.48498 * 109.47370 * 60.00227 * 3 2 1 7 7 C 1.40296 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.39682 * 120.00063 * 0.02562 * 7 2 1 10 10 C 1.39105 * 125.52869 * 180.02562 * 9 7 2 11 11 C 1.40932 * 106.50019 * 179.97438 * 10 9 7 12 12 C 1.40124 * 134.73079 * 179.97438 * 11 10 9 13 13 N 1.32195 * 118.43316 * 180.02562 * 12 11 10 14 14 C 1.32116 * 121.13732 * 359.94359 * 13 12 11 15 15 N 1.31768 * 122.73478 * 0.09362 * 14 13 12 16 16 C 1.32644 * 120.68515 * 359.93758 * 15 14 13 17 17 O 1.34533 * 133.73518 * 179.97438 * 16 15 14 18 18 H 0.97004 * 119.99705 * 359.97438 * 1 2 3 19 19 H 1.08004 * 126.74522 * 0.02562 * 10 9 7 20 20 H 1.08006 * 120.78040 * 0.03325 * 12 11 10 21 21 H 1.08004 * 118.63644 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7010 1.3464 0.0006 5 1 1.8823 2.3965 -1.2125 6 1 1.8823 2.3964 1.2125 7 6 2.0084 -1.2150 0.0005 8 1 3.0884 -1.2151 0.0010 9 6 1.3100 -2.4247 0.0005 10 6 1.8861 -3.6908 0.0016 11 6 0.8220 -4.6148 0.0017 12 6 0.7301 -6.0131 0.0022 13 7 -0.4712 -6.5649 0.0017 14 6 -1.5640 -5.8224 0.0020 15 7 -1.5305 -4.5052 0.0010 16 6 -0.3730 -3.8575 0.0008 17 8 -0.0360 -2.5550 -0.0006 18 1 -0.4850 0.8401 0.0004 19 1 2.9415 -3.9205 0.0029 20 1 1.6197 -6.6255 0.0029 21 1 -2.5249 -6.3156 0.0020 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213775006.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:53 Heat of formation + Delta-G solvation = 31.447774 kcal Electronic energy + Delta-G solvation = -10941.638905 eV Core-core repulsion = 8783.640096 eV Total energy + Delta-G solvation = -2157.998809 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 190.048 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.20266 -38.37200 -34.19232 -32.60646 -31.36613 -29.53223 -26.13265 -23.16462 -22.25730 -20.19929 -18.48828 -17.34774 -15.90171 -15.34886 -15.12786 -14.71697 -13.42375 -12.88980 -12.77735 -12.48853 -12.02729 -11.63400 -11.54779 -11.14548 -10.59012 -10.16380 -9.82842 -9.69284 -8.68928 -8.21193 -7.56305 -7.34222 -4.92578 1.81284 2.27913 2.71792 2.80022 2.87842 3.51868 3.51978 3.70777 4.72896 4.91180 5.19280 5.47359 5.72913 6.03363 6.47085 6.58058 6.78360 6.80642 7.21639 7.35565 7.59422 7.99027 8.09503 8.10970 8.59915 9.18065 9.61392 Molecular weight = 190.05amu Principal moments of inertia in cm(-1) A = 0.094219 B = 0.010668 C = 0.009615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 297.109266 B = 2624.109510 C = 2911.377665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.058 3.942 3 Si 0.935 3.065 4 H -0.253 1.253 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.406 4.406 8 H 0.121 0.879 9 C 0.242 3.758 10 C -0.402 4.402 11 C -0.134 4.134 12 C 0.094 3.906 13 N -0.517 5.517 14 C 0.208 3.792 15 N -0.491 5.491 16 C 0.213 3.787 17 O -0.157 6.157 18 H 0.296 0.704 19 H 0.132 0.868 20 H 0.150 0.850 21 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.707 0.689 0.003 2.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.168 4.168 3 Si 0.757 3.243 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.433 4.433 8 H 0.139 0.861 9 C 0.191 3.809 10 C -0.424 4.424 11 C -0.140 4.140 12 C -0.075 4.075 13 N -0.233 5.233 14 C -0.077 4.077 15 N -0.214 5.214 16 C 0.025 3.975 17 O -0.052 6.052 18 H 0.108 0.892 19 H 0.150 0.850 20 H 0.167 0.833 21 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.368 0.653 0.001 1.516 hybrid contribution 1.085 1.024 0.001 1.492 sum 2.453 1.677 0.002 2.972 Atomic orbital electron populations 1.69724 1.07936 1.31277 1.27531 1.26449 0.95257 1.02974 0.92101 0.85785 0.80611 0.78634 0.79264 1.17579 1.19066 1.19071 1.19245 0.95403 0.87015 1.41665 0.86123 1.19740 0.77459 0.94647 0.89080 1.20854 0.97386 0.89916 1.34240 1.20271 0.96290 0.95977 1.01435 1.22234 0.94785 0.90162 1.00300 1.67964 0.99209 1.41359 1.14723 1.23921 0.96669 0.84038 1.03024 1.66782 1.27890 1.10719 1.16031 1.19999 0.90045 0.84780 1.02671 1.84546 1.24424 1.19940 1.76293 0.89243 0.84959 0.83263 0.80024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -18.22 11.96 55.57 0.66 -17.56 14 2 C 0.06 1.32 5.50 -17.26 -0.09 1.23 14 3 Si 0.94 16.27 29.56 -169.99 -5.03 11.25 14 4 H -0.25 -4.22 7.11 56.52 0.40 -3.82 14 5 H -0.27 -4.57 7.11 56.52 0.40 -4.17 14 6 H -0.27 -4.57 7.11 56.52 0.40 -4.17 14 7 C -0.41 -9.75 9.30 -38.27 -0.36 -10.10 14 8 H 0.12 2.59 7.85 -52.49 -0.41 2.17 14 9 C 0.24 6.36 6.75 -38.72 -0.26 6.10 14 10 C -0.40 -9.88 10.94 -38.24 -0.42 -10.30 14 11 C -0.13 -3.33 6.23 -106.94 -0.67 -3.99 14 12 C 0.09 2.07 11.41 -16.69 -0.19 1.88 14 13 N -0.52 -11.28 10.42 -14.15 -0.15 -11.42 14 14 C 0.21 4.53 12.24 -91.90 -1.12 3.40 14 15 N -0.49 -12.31 10.46 -14.29 -0.15 -12.46 14 16 C 0.21 5.73 8.61 -15.97 -0.14 5.59 14 17 O -0.16 -4.43 8.87 2.47 0.02 -4.41 14 18 H 0.30 6.40 8.29 -40.82 -0.34 6.06 14 19 H 0.13 2.90 8.06 -52.48 -0.42 2.48 14 20 H 0.15 2.73 8.06 -52.48 -0.42 2.31 14 21 H 0.18 3.16 8.06 -52.48 -0.42 2.73 14 LS Contribution 203.89 15.07 3.07 3.07 Total: -1.00 -28.49 203.89 -5.63 -34.12 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -0.81 Total: 3.60 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -3.25 Total: -6.19 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.37 Total: -41.45 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: 0.02 Total: -4.41 kcal Atomic # 14 Polarization: 16.27 SS G_CDS: -5.03 Total: 11.25 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -28.49 -5.63 -34.12 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213775006.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.570 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds