Wall clock time and date at job start Mon Mar 30 2020 02:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31023 * 1 3 3 Si 1.86799 * 120.00173 * 2 1 4 4 H 1.48503 * 109.47072 * 270.00603 * 3 2 1 5 5 H 1.48494 * 109.46913 * 30.00305 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00668 * 3 2 1 7 7 C 1.39728 * 119.99561 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.41321 * 120.00286 * 359.97438 * 7 2 1 10 10 N 1.32812 * 122.82220 * 0.22674 * 9 7 2 11 11 N 1.27916 * 118.79943 * 180.33829 * 10 9 7 12 12 S 1.69725 * 107.42183 * 359.69377 * 11 10 9 13 13 C 1.39312 * 122.81992 * 180.02562 * 9 7 2 14 14 Cl 1.73599 * 127.83244 * 0.02562 * 13 9 7 15 15 H 0.97003 * 119.99432 * 359.97438 * 1 2 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4418 2.6526 0.7001 6 1 3.5419 1.4400 0.6999 7 6 2.0088 -1.2101 -0.0005 8 1 3.0888 -1.2102 -0.0010 9 6 1.3021 -2.4340 -0.0005 10 7 -0.0244 -2.4994 -0.0045 11 7 -0.5847 -3.6492 0.0025 12 16 0.6484 -4.8154 0.0068 13 6 1.9385 -3.6733 -0.0005 14 17 3.6445 -3.9942 0.0001 15 1 -0.4849 0.8401 0.0004 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213792691.mol2 15 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:01 Heat of formation + Delta-G solvation = 27.706377 kcal Electronic energy + Delta-G solvation = -7767.712396 eV Core-core repulsion = 5914.038274 eV Total energy + Delta-G solvation = -1853.674122 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 189.966 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.36450 -37.32085 -35.60598 -32.14281 -27.79623 -26.28347 -21.85643 -20.42179 -17.67692 -17.26904 -16.07383 -15.73410 -14.95308 -13.81398 -13.48381 -12.98240 -12.92472 -12.81615 -12.58589 -12.02897 -11.41131 -11.29888 -10.52727 -10.08381 -9.96269 -8.68860 -6.65530 -0.45370 0.49792 1.13252 1.35190 1.42980 1.58563 1.89633 1.96839 2.19711 3.14923 3.95236 4.61327 5.10526 6.01546 6.12307 6.60728 7.44457 8.24139 Molecular weight = 189.97amu Principal moments of inertia in cm(-1) A = 0.048919 B = 0.016806 C = 0.012564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.242053 B = 1665.679096 C = 2228.075640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.022 3.978 3 Si 1.000 3.000 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.251 1.251 7 C -0.422 4.422 8 H 0.107 0.893 9 C 0.146 3.854 10 N -0.199 5.199 11 N -0.230 5.230 12 S 0.182 5.818 13 C -0.344 4.344 14 Cl -0.003 7.003 15 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.802 -0.781 0.018 4.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.199 4.199 3 Si 0.818 3.182 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.174 1.174 7 C -0.457 4.457 8 H 0.125 0.875 9 C 0.015 3.985 10 N -0.078 5.078 11 N -0.211 5.211 12 S 0.314 5.686 13 C -0.508 4.508 14 Cl 0.024 6.976 15 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.035 -1.542 0.024 3.405 hybrid contribution 1.568 1.248 -0.011 2.004 sum 4.603 -0.295 0.014 4.613 Atomic orbital electron populations 1.70112 1.09033 1.31026 1.29775 1.27122 0.95852 1.05227 0.91708 0.84921 0.78921 0.74475 0.79857 1.18303 1.18962 1.17398 1.19538 0.95428 0.88134 1.42631 0.87528 1.19816 0.86341 0.94947 0.97401 1.71807 1.10567 1.13004 1.12432 1.82037 1.20820 0.97442 1.20810 1.83210 0.97247 1.19894 1.68269 1.25942 0.90936 0.95490 1.38386 1.98178 1.07044 1.94580 1.97792 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -40.12 11.70 21.80 0.25 -39.86 13 2 C 0.02 1.07 5.49 85.17 0.47 1.54 13 3 Si 1.00 35.71 29.56 68.60 2.03 37.74 13 4 H -0.26 -8.90 7.11 99.48 0.71 -8.19 13 5 H -0.27 -9.04 7.11 99.48 0.71 -8.34 13 6 H -0.25 -8.58 7.11 99.48 0.71 -7.87 13 7 C -0.42 -21.69 9.10 23.39 0.21 -21.47 13 8 H 0.11 5.12 7.51 -2.91 -0.02 5.10 13 9 C 0.15 7.84 6.54 40.01 0.26 8.10 13 10 N -0.20 -11.07 9.50 -53.56 -0.51 -11.57 13 11 N -0.23 -11.71 13.26 37.02 0.49 -11.22 13 12 S 0.18 7.98 23.84 -56.49 -1.35 6.63 13 13 C -0.34 -16.38 7.37 68.08 0.50 -15.88 13 14 Cl 0.00 -0.14 28.80 -2.72 -0.08 -0.22 13 15 H 0.29 13.50 8.30 -92.71 -0.77 12.73 13 Total: -1.00 -56.39 182.29 3.61 -52.78 By element: Atomic # 1 Polarization: -7.90 SS G_CDS: 1.33 Total: -6.57 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 1.44 Total: -27.72 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: 0.24 Total: -62.65 kcal Atomic # 14 Polarization: 35.71 SS G_CDS: 2.03 Total: 37.74 kcal Atomic # 16 Polarization: 7.98 SS G_CDS: -1.35 Total: 6.63 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -56.39 3.61 -52.78 kcal The number of atoms in the molecule is 15 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213792691.mol2 15 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.488 kcal (2) G-P(sol) polarization free energy of solvation -56.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds