Wall clock time and date at job start Mon Mar 30 2020 01:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99907 * 2 1 4 4 H 1.48500 * 109.47385 * 270.00479 * 3 2 1 5 5 H 1.48504 * 109.47165 * 30.00341 * 3 2 1 6 6 H 1.48500 * 109.47346 * 150.00626 * 3 2 1 7 7 C 1.37872 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00758 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99931 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.47345 * 300.00238 * 9 7 2 11 11 O 1.42903 * 109.46442 * 60.00168 * 9 7 2 12 12 C 1.53001 * 109.47316 * 179.97438 * 9 7 2 13 13 H 1.09001 * 109.59743 * 300.70572 * 12 9 7 14 14 C 1.52939 * 109.60213 * 180.38139 * 12 9 7 15 15 C 1.53706 * 112.48828 * 209.97053 * 14 12 9 16 16 S 1.83398 * 104.96903 * 2.82390 * 15 14 12 17 17 C 1.55146 * 109.60000 * 61.02763 * 12 9 7 18 18 H 0.97000 * 120.00088 * 359.97438 * 1 2 3 19 19 H 0.96700 * 114.00311 * 60.00230 * 11 9 7 20 20 H 1.08996 * 108.88992 * 330.76360 * 14 12 9 21 21 H 1.09003 * 108.88695 * 89.17820 * 14 12 9 22 22 H 1.08992 * 110.34103 * 121.69804 * 15 14 12 23 23 H 1.09000 * 110.33999 * 243.84859 * 15 14 12 24 24 H 1.09005 * 111.13030 * 279.27778 * 17 12 9 25 25 H 1.09001 * 111.13753 * 43.45877 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8746 -0.6800 -0.8911 11 8 3.9882 -0.5207 1.1657 12 6 4.0216 -2.6365 -0.0010 13 1 3.6495 -3.1558 0.8822 14 6 5.5510 -2.6400 0.0080 15 6 6.1403 -3.8702 -0.7005 16 16 4.6881 -4.7875 -1.3432 17 6 3.5271 -3.3635 -1.2793 18 1 -0.4850 0.8400 0.0004 19 1 3.7032 -0.9244 1.9969 20 1 5.9088 -1.7399 -0.4918 21 1 5.8978 -2.6281 1.0413 22 1 6.7869 -3.5610 -1.5215 23 1 6.6959 -4.4852 0.0075 24 1 2.4978 -3.7035 -1.1647 25 1 3.6336 -2.7284 -2.1587 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224714825.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:46 Heat of formation + Delta-G solvation = -62.261887 kcal Electronic energy + Delta-G solvation = -10078.023662 eV Core-core repulsion = 8182.257070 eV Total energy + Delta-G solvation = -1895.766592 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.44127 -34.19448 -32.32884 -29.82263 -26.70343 -24.72116 -21.70665 -19.59073 -17.39275 -15.92173 -15.54938 -14.80918 -14.44917 -13.85716 -13.23703 -12.94136 -12.53523 -11.83425 -11.60261 -11.46675 -11.23355 -10.87482 -10.53390 -10.26380 -9.92132 -9.65778 -9.04097 -8.67461 -8.31584 -7.39197 -6.18008 -4.29749 2.26386 2.73473 3.34224 3.44391 3.69014 4.47870 4.97619 5.08227 5.17400 5.36538 5.47763 5.68258 5.88558 5.91940 6.06977 6.19947 6.40973 6.51116 6.60013 7.24356 7.51244 8.22800 8.75726 8.93455 9.46187 10.92313 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.063262 B = 0.012643 C = 0.011217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.495320 B = 2214.210701 C = 2495.606281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.084 3.916 3 Si 0.869 3.131 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.218 1.218 7 C -0.565 4.565 8 H 0.075 0.925 9 C 0.204 3.796 10 H 0.056 0.944 11 O -0.581 6.581 12 C -0.106 4.106 13 H 0.078 0.922 14 C -0.121 4.121 15 C -0.063 4.063 16 S -0.343 6.343 17 C -0.029 4.029 18 H 0.265 0.735 19 H 0.357 0.643 20 H 0.070 0.930 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.109 0.891 25 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.699 -4.001 -0.133 10.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.121 4.121 3 Si 0.696 3.304 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.141 1.141 7 C -0.602 4.602 8 H 0.093 0.907 9 C 0.145 3.855 10 H 0.074 0.926 11 O -0.387 6.387 12 C -0.127 4.127 13 H 0.097 0.903 14 C -0.160 4.160 15 C -0.211 4.211 16 S -0.117 6.117 17 C -0.176 4.176 18 H 0.075 0.925 19 H 0.204 0.796 20 H 0.088 0.912 21 H 0.091 0.909 22 H 0.100 0.900 23 H 0.108 0.892 24 H 0.127 0.873 25 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.706 -4.695 -0.940 10.822 hybrid contribution 0.044 1.586 0.599 1.696 sum 9.749 -3.109 -0.341 10.239 Atomic orbital electron populations 1.69954 1.06767 1.27522 1.48484 1.25011 0.94614 0.99963 0.92523 0.87055 0.83017 0.81977 0.78388 1.21397 1.22186 1.14061 1.21539 0.89636 0.94853 1.54164 0.90708 1.19849 0.93989 0.85973 0.85699 0.92634 1.86676 1.77913 1.57551 1.16550 1.22627 0.92502 1.00227 0.97305 0.90319 1.22011 0.96226 0.96502 1.01266 1.23886 0.96975 0.98333 1.01889 1.87577 1.12489 1.24177 1.87411 1.24291 0.99500 0.92989 1.00841 0.92525 0.79629 0.91165 0.90869 0.89958 0.89211 0.87296 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.96 55.43 0.77 -25.76 15 2 C 0.08 2.33 5.47 -17.82 -0.10 2.23 15 3 Si 0.87 21.20 26.99 -169.99 -4.59 16.62 15 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 5 H -0.30 -7.30 7.11 56.52 0.40 -6.89 15 6 H -0.22 -5.18 5.31 56.52 0.30 -4.88 15 7 C -0.56 -14.84 8.78 -34.44 -0.30 -15.15 15 8 H 0.07 2.12 7.34 -52.49 -0.39 1.73 15 9 C 0.20 4.45 1.70 -27.88 -0.05 4.40 15 10 H 0.06 1.26 7.54 -51.93 -0.39 0.87 15 11 O -0.58 -12.37 9.77 -35.23 -0.34 -12.71 15 12 C -0.11 -1.94 2.28 -89.51 -0.20 -2.15 15 13 H 0.08 1.48 8.14 -51.93 -0.42 1.06 15 14 C -0.12 -1.88 5.51 -26.40 -0.15 -2.03 15 15 C -0.06 -0.88 7.38 37.52 0.28 -0.60 15 16 S -0.34 -5.75 23.22 -107.50 -2.50 -8.24 15 17 C -0.03 -0.52 6.17 38.29 0.24 -0.28 15 18 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 19 H 0.36 6.71 9.04 45.56 0.41 7.12 15 20 H 0.07 1.11 7.78 -51.93 -0.40 0.71 15 21 H 0.07 1.06 8.14 -51.93 -0.42 0.63 15 22 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 23 H 0.09 1.11 8.14 -51.93 -0.42 0.69 15 24 H 0.11 2.09 7.60 -51.93 -0.39 1.69 15 25 H 0.09 1.60 8.11 -51.93 -0.42 1.18 15 LS Contribution 219.03 15.07 3.30 3.30 Total: -1.00 -29.18 219.03 -6.15 -35.33 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -2.51 Total: 5.04 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -0.28 Total: -13.57 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.77 Total: -25.76 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.34 Total: -12.71 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.59 Total: 16.62 kcal Atomic # 16 Polarization: -5.75 SS G_CDS: -2.50 Total: -8.24 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -29.18 -6.15 -35.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224714825.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.927 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds