Wall clock time and date at job start Mon Mar 30 2020 01:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99899 * 2 1 4 4 H 1.48493 * 109.47238 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47366 * 119.99792 * 3 2 1 6 6 H 1.48501 * 109.47276 * 239.99754 * 3 2 1 7 7 C 1.37882 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99553 * 17.76640 * 7 2 1 9 9 C 1.50695 * 120.00219 * 197.75912 * 7 2 1 10 10 H 1.08996 * 109.47129 * 305.68506 * 9 7 2 11 11 C 1.53003 * 109.47187 * 65.68712 * 9 7 2 12 12 C 1.52992 * 109.47084 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47544 * 300.00161 * 12 11 9 14 14 C 1.53003 * 109.47062 * 59.99826 * 13 12 11 15 15 C 1.52995 * 109.46960 * 185.68763 * 9 7 2 16 16 H 1.09001 * 109.47413 * 299.99990 * 15 9 7 17 17 Cl 1.80303 * 109.47495 * 60.00226 * 15 9 7 18 18 H 0.96999 * 119.99887 * 174.61469 * 1 2 3 19 19 H 1.09000 * 109.46619 * 300.00121 * 11 9 7 20 20 H 1.09005 * 109.46697 * 59.99715 * 11 9 7 21 21 H 1.09006 * 109.46908 * 179.97438 * 12 11 9 22 22 H 1.09005 * 109.47402 * 60.00372 * 12 11 9 23 23 H 1.09000 * 109.46520 * 300.00331 * 13 12 11 24 24 H 1.08994 * 109.47629 * 180.02562 * 13 12 11 25 25 H 1.08997 * 109.46830 * 180.02562 * 14 13 12 26 26 H 1.08996 * 109.47254 * 60.00360 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6965 1.2126 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 1.5032 -2.1072 -0.2845 9 6 3.4577 -1.2249 0.3986 10 1 4.0161 -0.5131 -0.2092 11 6 3.5900 -0.8485 1.8757 12 6 5.0652 -0.8804 2.2800 13 6 5.6239 -2.2878 2.0603 14 6 5.4916 -2.6642 0.5833 15 6 4.0168 -2.6320 0.1789 16 1 3.4584 -3.3440 0.7867 17 17 3.8610 -3.0757 -1.5618 18 1 -0.4850 -0.8363 -0.0788 19 1 3.1916 0.1540 2.0321 20 1 3.0315 -1.5604 2.4835 21 1 5.1595 -0.6118 3.3322 22 1 5.6241 -0.1688 1.6722 23 1 5.0650 -2.9994 2.6681 24 1 6.6747 -2.3107 2.3488 25 1 5.8892 -3.6670 0.4269 26 1 6.0504 -1.9526 -0.0245 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238524009.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:34 Heat of formation + Delta-G solvation = -61.302997 kcal Electronic energy + Delta-G solvation = -10221.027929 eV Core-core repulsion = 8323.259211 eV Total energy + Delta-G solvation = -1897.768718 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.066 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.42001 -36.31327 -34.92596 -31.85931 -31.23273 -26.25866 -23.42327 -22.30849 -20.55356 -19.58011 -16.59895 -15.68181 -15.47876 -15.20384 -14.98952 -14.32203 -13.58721 -13.39882 -13.13003 -12.55468 -12.48071 -11.99478 -11.84101 -11.62591 -11.43886 -11.28389 -11.17626 -10.78111 -10.61497 -10.24824 -8.66621 -6.26364 1.45221 1.54491 1.61468 1.72078 2.51902 3.14028 3.83890 3.91182 4.17136 4.33147 4.43944 4.53890 4.67474 4.74449 4.89201 5.04896 5.22065 5.24547 5.30318 5.40912 5.52406 5.71351 6.07692 6.13485 6.66404 7.49032 8.71923 Molecular weight = 188.07amu Principal moments of inertia in cm(-1) A = 0.035780 B = 0.018957 C = 0.014349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.376435 B = 1476.661493 C = 1950.824540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.024 4.024 3 Si 1.078 2.922 4 H -0.295 1.295 5 H -0.234 1.234 6 H -0.271 1.271 7 C -0.584 4.584 8 H 0.021 0.979 9 C 0.016 3.984 10 H 0.028 0.972 11 C -0.121 4.121 12 C -0.123 4.123 13 C -0.108 4.108 14 C -0.118 4.118 15 C 0.030 3.970 16 H 0.075 0.925 17 Cl -0.219 7.219 18 H 0.249 0.751 19 H 0.052 0.948 20 H 0.044 0.956 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.443 -2.474 4.268 14.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.220 4.220 3 Si 0.900 3.100 4 H -0.222 1.222 5 H -0.159 1.159 6 H -0.197 1.197 7 C -0.622 4.622 8 H 0.039 0.961 9 C -0.004 4.004 10 H 0.046 0.954 11 C -0.159 4.159 12 C -0.160 4.160 13 C -0.146 4.146 14 C -0.156 4.156 15 C -0.014 4.014 16 H 0.093 0.907 17 Cl -0.192 7.192 18 H 0.058 0.942 19 H 0.071 0.929 20 H 0.063 0.937 21 H 0.095 0.905 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.113 0.887 25 H 0.100 0.900 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.237 -0.896 4.212 13.920 hybrid contribution -0.829 -1.977 -0.575 2.220 sum 12.408 -2.873 3.637 13.245 Atomic orbital electron populations 1.70990 1.08336 1.29766 1.49245 1.27070 0.96057 1.06118 0.92802 0.83672 0.75012 0.71913 0.79415 1.22150 1.15859 1.19653 1.22153 0.96806 0.94687 1.48577 0.96084 1.19278 0.94742 0.92197 0.94157 0.95436 1.21954 0.96587 1.00880 0.96490 1.21666 0.94865 0.97737 1.01739 1.21510 1.02332 0.96466 0.94247 1.21933 0.92501 1.03075 0.98040 1.24154 0.98920 0.99087 0.79225 0.90662 1.98651 1.98776 1.94161 1.27660 0.94203 0.92937 0.93694 0.90501 0.91745 0.91795 0.88713 0.90007 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.26 13.69 21.45 0.29 -59.97 15 2 C -0.02 -1.37 5.33 84.66 0.45 -0.92 15 3 Si 1.08 50.14 26.37 68.60 1.81 51.94 15 4 H -0.29 -14.04 7.11 99.48 0.71 -13.33 15 5 H -0.23 -9.38 5.61 99.48 0.56 -8.83 15 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 7 C -0.58 -32.75 8.16 25.60 0.21 -32.54 15 8 H 0.02 1.31 7.85 -2.91 -0.02 1.29 15 9 C 0.02 0.69 1.29 -11.54 -0.01 0.68 15 10 H 0.03 1.25 6.79 -2.39 -0.02 1.23 15 11 C -0.12 -4.73 4.89 30.59 0.15 -4.58 15 12 C -0.12 -3.48 5.92 30.59 0.18 -3.30 15 13 C -0.11 -2.63 5.92 30.59 0.18 -2.45 15 14 C -0.12 -3.35 5.33 30.58 0.16 -3.18 15 15 C 0.03 1.14 2.64 30.58 0.08 1.22 15 16 H 0.08 2.98 8.14 -2.39 -0.02 2.96 15 17 Cl -0.22 -8.98 27.84 -2.72 -0.08 -9.05 15 18 H 0.25 16.17 8.73 -92.71 -0.81 15.36 15 19 H 0.05 2.18 4.83 -2.39 -0.01 2.17 15 20 H 0.04 1.81 8.14 -2.38 -0.02 1.79 15 21 H 0.08 1.86 8.14 -2.38 -0.02 1.84 15 22 H 0.06 1.76 8.14 -2.38 -0.02 1.74 15 23 H 0.06 1.54 8.14 -2.39 -0.02 1.52 15 24 H 0.09 1.73 8.14 -2.39 -0.02 1.71 15 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 Total: -1.00 -64.35 220.54 4.38 -59.96 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: 0.96 Total: 2.20 kcal Atomic # 6 Polarization: -46.48 SS G_CDS: 1.40 Total: -45.08 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.29 Total: -59.97 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 1.81 Total: 51.94 kcal Atomic # 17 Polarization: -8.98 SS G_CDS: -0.08 Total: -9.05 kcal Total: -64.35 4.38 -59.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238524009.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.341 kcal (2) G-P(sol) polarization free energy of solvation -64.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds