Wall clock time and date at job start Mon Mar 30 2020 01:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00041 * 2 1 4 4 H 1.48507 * 109.47084 * 264.78894 * 3 2 1 5 5 H 1.48499 * 109.47203 * 24.78727 * 3 2 1 6 6 H 1.48499 * 109.47397 * 144.79147 * 3 2 1 7 7 C 1.37872 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00039 * 5.62938 * 7 2 1 9 9 C 1.50698 * 120.00164 * 185.63257 * 7 2 1 10 10 H 1.09006 * 109.46853 * 334.83275 * 9 7 2 11 11 C 1.53003 * 109.47235 * 214.83474 * 9 7 2 12 12 C 1.52998 * 109.47362 * 179.97438 * 11 9 7 13 13 C 1.53007 * 109.46884 * 59.99946 * 12 11 9 14 14 C 1.52997 * 109.46862 * 300.00174 * 13 12 11 15 15 C 1.52997 * 109.47316 * 94.83366 * 9 7 2 16 16 H 1.08997 * 109.47243 * 299.99902 * 15 9 7 17 17 Cl 1.80291 * 109.47215 * 60.00095 * 15 9 7 18 18 H 0.97004 * 119.99877 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.47251 * 59.99687 * 11 9 7 20 20 H 1.08997 * 109.47019 * 299.99564 * 11 9 7 21 21 H 1.08997 * 109.47011 * 299.99953 * 12 11 9 22 22 H 1.08992 * 109.47223 * 179.97438 * 12 11 9 23 23 H 1.08997 * 109.46820 * 179.97438 * 13 12 11 24 24 H 1.08997 * 109.47292 * 60.00178 * 13 12 11 25 25 H 1.09006 * 109.47100 * 180.02562 * 14 13 12 26 26 H 1.09004 * 109.47553 * 299.99565 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6068 1.9828 -1.3944 5 1 1.3959 2.6819 0.5870 6 1 3.4873 1.4745 0.8072 7 6 2.0045 -1.1940 -0.0005 8 1 1.4684 -2.1271 -0.0927 9 6 3.5060 -1.1973 0.1276 10 1 3.9033 -0.2474 -0.2304 11 6 4.0867 -2.3402 -0.7077 12 6 5.6112 -2.3431 -0.5782 13 6 5.9979 -2.5365 0.8895 14 6 5.4172 -1.3936 1.7247 15 6 3.8923 -1.3910 1.5952 16 1 3.4787 -0.5768 2.1903 17 17 3.2353 -2.9620 2.1873 18 1 -0.4850 0.8401 0.0004 19 1 3.8115 -2.2022 -1.7533 20 1 3.6895 -3.2900 -0.3497 21 1 6.0080 -1.3933 -0.9364 22 1 6.0247 -3.1575 -1.1729 23 1 7.0840 -2.5390 0.9817 24 1 5.6010 -3.4863 1.2477 25 1 5.6931 -1.5311 2.7702 26 1 5.8142 -0.4437 1.3665 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238524932.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:36 Heat of formation + Delta-G solvation = -41.655846 kcal Electronic energy + Delta-G solvation = -10274.669059 eV Core-core repulsion = 8377.752306 eV Total energy + Delta-G solvation = -1896.916753 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.066 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.84165 -34.38772 -32.79259 -30.28040 -29.81994 -24.77600 -21.78907 -20.90601 -18.78816 -16.82252 -15.19983 -14.15868 -13.83824 -13.71483 -13.09635 -12.57579 -12.04373 -11.82763 -11.27779 -10.97804 -10.88744 -10.73835 -10.44024 -9.81122 -9.77546 -9.45877 -9.36281 -9.03525 -8.79652 -8.50125 -6.06409 -4.04927 3.24339 3.30184 3.34319 3.39743 4.39307 5.14546 5.32890 5.38468 5.45135 5.88688 6.02885 6.09452 6.15762 6.25340 6.34378 6.41179 6.49825 6.67735 6.75020 6.93214 7.28336 7.30460 7.73310 8.55176 9.04436 9.55762 11.07040 Molecular weight = 188.07amu Principal moments of inertia in cm(-1) A = 0.042982 B = 0.017488 C = 0.015516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.286161 B = 1600.725955 C = 1804.170259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.871 3.129 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.501 4.501 8 H 0.079 0.921 9 C 0.011 3.989 10 H 0.043 0.957 11 C -0.107 4.107 12 C -0.122 4.122 13 C -0.117 4.117 14 C -0.128 4.128 15 C 0.018 3.982 16 H 0.082 0.918 17 Cl -0.199 7.199 18 H 0.263 0.737 19 H 0.056 0.944 20 H 0.063 0.937 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.554 -1.809 1.741 10.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.698 3.302 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.539 4.539 8 H 0.097 0.903 9 C -0.008 4.008 10 H 0.061 0.939 11 C -0.145 4.145 12 C -0.160 4.160 13 C -0.155 4.155 14 C -0.166 4.166 15 C -0.026 4.026 16 H 0.100 0.900 17 Cl -0.173 7.173 18 H 0.073 0.927 19 H 0.075 0.925 20 H 0.082 0.918 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.322 -1.801 1.782 10.629 hybrid contribution 0.322 0.997 0.104 1.053 sum 10.645 -0.803 1.887 10.840 Atomic orbital electron populations 1.69908 1.06214 1.26779 1.50539 1.25087 0.94689 0.98688 0.94670 0.86977 0.80086 0.84330 0.78764 1.20123 1.21523 1.19328 1.20960 0.88622 0.94803 1.49522 0.90261 1.19402 0.97680 0.95089 0.88665 0.93893 1.21598 0.92237 1.00484 1.00199 1.21633 0.98277 1.00453 0.95611 1.21522 0.98903 0.99193 0.95853 1.21949 0.95439 0.99335 0.99848 1.24604 0.92032 0.84866 1.01073 0.90004 1.98621 1.89003 1.39646 1.90067 0.92710 0.92550 0.91799 0.92929 0.93057 0.93053 0.91287 0.92245 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.96 55.43 0.77 -26.38 15 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 15 3 Si 0.87 20.96 27.01 -169.99 -4.59 16.37 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 6 H -0.27 -6.07 6.80 56.52 0.38 -5.68 15 7 C -0.50 -13.66 8.14 -34.44 -0.28 -13.94 15 8 H 0.08 2.40 8.06 -52.48 -0.42 1.98 15 9 C 0.01 0.24 1.56 -91.77 -0.14 0.10 15 10 H 0.04 0.98 5.27 -51.93 -0.27 0.71 15 11 C -0.11 -2.14 4.98 -26.73 -0.13 -2.27 15 12 C -0.12 -1.99 5.92 -26.73 -0.16 -2.15 15 13 C -0.12 -1.81 5.72 -26.73 -0.15 -1.97 15 14 C -0.13 -2.14 5.52 -26.71 -0.15 -2.28 15 15 C 0.02 0.38 3.07 -26.71 -0.08 0.30 15 16 H 0.08 1.77 8.14 -51.93 -0.42 1.35 15 17 Cl -0.20 -4.13 25.33 -51.86 -1.31 -5.45 15 18 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 19 H 0.06 1.13 8.14 -51.93 -0.42 0.70 15 20 H 0.06 1.32 7.06 -51.93 -0.37 0.95 15 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 15 24 H 0.07 1.11 7.06 -51.93 -0.37 0.74 15 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.07 1.10 8.14 -51.93 -0.42 0.67 15 LS Contribution 220.44 15.07 3.32 3.32 Total: -1.00 -28.63 220.44 -6.55 -35.17 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -3.54 Total: -2.71 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -1.19 Total: -20.33 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.77 Total: -26.38 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.59 Total: 16.37 kcal Atomic # 17 Polarization: -4.13 SS G_CDS: -1.31 Total: -5.45 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -28.63 -6.55 -35.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238524932.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.484 kcal (2) G-P(sol) polarization free energy of solvation -28.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds