Wall clock time and date at job start Mon Mar 30 2020 01:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00041 * 2 1 4 4 H 1.48507 * 109.47084 * 264.78894 * 3 2 1 5 5 H 1.48499 * 109.47203 * 24.78727 * 3 2 1 6 6 H 1.48499 * 109.47397 * 144.79147 * 3 2 1 7 7 C 1.37872 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00039 * 5.62938 * 7 2 1 9 9 C 1.50698 * 120.00164 * 185.63257 * 7 2 1 10 10 H 1.09006 * 109.46853 * 334.83275 * 9 7 2 11 11 C 1.53003 * 109.47235 * 214.83474 * 9 7 2 12 12 C 1.52998 * 109.47362 * 179.97438 * 11 9 7 13 13 C 1.53007 * 109.46884 * 59.99946 * 12 11 9 14 14 C 1.52997 * 109.46862 * 300.00174 * 13 12 11 15 15 C 1.52997 * 109.47316 * 94.83366 * 9 7 2 16 16 H 1.08997 * 109.47243 * 299.99902 * 15 9 7 17 17 Cl 1.80291 * 109.47215 * 60.00095 * 15 9 7 18 18 H 0.97004 * 119.99877 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.47251 * 59.99687 * 11 9 7 20 20 H 1.08997 * 109.47019 * 299.99564 * 11 9 7 21 21 H 1.08997 * 109.47011 * 299.99953 * 12 11 9 22 22 H 1.08992 * 109.47223 * 179.97438 * 12 11 9 23 23 H 1.08997 * 109.46820 * 179.97438 * 13 12 11 24 24 H 1.08997 * 109.47292 * 60.00178 * 13 12 11 25 25 H 1.09006 * 109.47100 * 180.02562 * 14 13 12 26 26 H 1.09004 * 109.47553 * 299.99565 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6068 1.9828 -1.3944 5 1 1.3959 2.6819 0.5870 6 1 3.4873 1.4745 0.8072 7 6 2.0045 -1.1940 -0.0005 8 1 1.4684 -2.1271 -0.0927 9 6 3.5060 -1.1973 0.1276 10 1 3.9033 -0.2474 -0.2304 11 6 4.0867 -2.3402 -0.7077 12 6 5.6112 -2.3431 -0.5782 13 6 5.9979 -2.5365 0.8895 14 6 5.4172 -1.3936 1.7247 15 6 3.8923 -1.3910 1.5952 16 1 3.4787 -0.5768 2.1903 17 17 3.2353 -2.9620 2.1873 18 1 -0.4850 0.8401 0.0004 19 1 3.8115 -2.2022 -1.7533 20 1 3.6895 -3.2900 -0.3497 21 1 6.0080 -1.3933 -0.9364 22 1 6.0247 -3.1575 -1.1729 23 1 7.0840 -2.5390 0.9817 24 1 5.6010 -3.4863 1.2477 25 1 5.6931 -1.5311 2.7702 26 1 5.8142 -0.4437 1.3665 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238524932.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:36 Heat of formation + Delta-G solvation = -58.452640 kcal Electronic energy + Delta-G solvation = -10275.397423 eV Core-core repulsion = 8377.752306 eV Total energy + Delta-G solvation = -1897.645117 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.066 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.36940 -36.01325 -34.79233 -32.00834 -31.29120 -26.68336 -23.24824 -22.49209 -20.35641 -18.88513 -16.87639 -15.88706 -15.38069 -15.20004 -14.67153 -14.53791 -13.60326 -13.29279 -13.04020 -12.69070 -12.49427 -12.24159 -11.87907 -11.65528 -11.31581 -11.23404 -11.07509 -10.76619 -10.50714 -10.47885 -8.23308 -6.26384 1.35386 1.36143 1.45672 1.75796 2.36668 3.09326 3.96392 4.01426 4.10638 4.45502 4.54954 4.65502 4.73123 4.82180 4.92649 4.99669 5.16985 5.28458 5.40403 5.42703 5.66158 5.68748 5.73800 6.40413 6.82083 7.37844 8.94023 Molecular weight = 188.07amu Principal moments of inertia in cm(-1) A = 0.042982 B = 0.017488 C = 0.015516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.286161 B = 1600.725955 C = 1804.170259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.007 3.993 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.239 1.239 7 C -0.499 4.499 8 H 0.031 0.969 9 C 0.008 3.992 10 H 0.050 0.950 11 C -0.107 4.107 12 C -0.116 4.116 13 C -0.115 4.115 14 C -0.123 4.123 15 C 0.015 3.985 16 H 0.068 0.932 17 Cl -0.208 7.208 18 H 0.263 0.737 19 H 0.046 0.954 20 H 0.048 0.952 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.650 -1.036 1.967 13.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.189 4.189 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.162 1.162 7 C -0.537 4.537 8 H 0.049 0.951 9 C -0.011 4.011 10 H 0.068 0.932 11 C -0.145 4.145 12 C -0.154 4.154 13 C -0.153 4.153 14 C -0.160 4.160 15 C -0.029 4.029 16 H 0.086 0.914 17 Cl -0.182 7.182 18 H 0.072 0.928 19 H 0.065 0.935 20 H 0.067 0.933 21 H 0.084 0.916 22 H 0.091 0.909 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.451 -1.048 2.010 13.640 hybrid contribution -0.712 0.650 0.019 0.964 sum 12.739 -0.398 2.029 12.905 Atomic orbital electron populations 1.70082 1.08371 1.27761 1.52999 1.25989 0.95431 1.02935 0.94585 0.85908 0.79583 0.78916 0.79590 1.19096 1.21917 1.16227 1.21174 0.91370 0.92862 1.48285 0.95068 1.19405 0.94373 0.96532 0.90816 0.93241 1.21524 0.95501 0.98517 0.98923 1.21591 0.94725 1.02135 0.96908 1.21536 1.00947 0.98113 0.94661 1.21955 0.91672 1.00788 1.01608 1.24540 0.95239 0.84200 0.98942 0.91353 1.98623 1.89417 1.40094 1.90065 0.92827 0.93499 0.93339 0.91592 0.90903 0.89546 0.92217 0.90322 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.64 13.96 21.45 0.30 -59.35 15 2 C 0.01 0.39 5.47 84.65 0.46 0.86 15 3 Si 0.94 42.71 27.01 68.60 1.85 44.56 15 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 15 6 H -0.24 -9.68 6.80 99.48 0.68 -9.01 15 7 C -0.50 -27.78 8.14 25.60 0.21 -27.57 15 8 H 0.03 1.98 8.06 -2.91 -0.02 1.96 15 9 C 0.01 0.34 1.56 -11.54 -0.02 0.32 15 10 H 0.05 2.11 5.27 -2.38 -0.01 2.10 15 11 C -0.11 -4.12 4.98 30.59 0.15 -3.96 15 12 C -0.12 -3.33 5.92 30.60 0.18 -3.14 15 13 C -0.12 -3.05 5.72 30.60 0.18 -2.88 15 14 C -0.12 -3.58 5.52 30.61 0.17 -3.41 15 15 C 0.01 0.59 3.07 30.61 0.09 0.68 15 16 H 0.07 2.84 8.14 -2.39 -0.02 2.82 15 17 Cl -0.21 -8.52 25.33 -2.72 -0.07 -8.59 15 18 H 0.26 15.49 8.31 -92.71 -0.77 14.72 15 19 H 0.05 1.84 8.14 -2.39 -0.02 1.82 15 20 H 0.05 1.99 7.06 -2.39 -0.02 1.97 15 21 H 0.07 1.75 8.14 -2.39 -0.02 1.73 15 22 H 0.07 1.80 8.14 -2.39 -0.02 1.78 15 23 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15 24 H 0.06 1.71 7.06 -2.39 -0.02 1.69 15 25 H 0.08 2.03 8.14 -2.38 -0.02 2.01 15 26 H 0.08 2.26 8.14 -2.38 -0.02 2.24 15 Total: -1.00 -63.25 220.44 4.62 -58.62 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.11 Total: 3.87 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 1.42 Total: -39.12 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.30 Total: -59.35 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.85 Total: 44.56 kcal Atomic # 17 Polarization: -8.52 SS G_CDS: -0.07 Total: -8.59 kcal Total: -63.25 4.62 -58.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238524932.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.171 kcal (2) G-P(sol) polarization free energy of solvation -63.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds