Wall clock time and date at job start Mon Mar 30 2020 01:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30696 * 1 3 3 Si 1.86805 * 119.99757 * 2 1 4 4 H 1.48503 * 109.47080 * 269.99834 * 3 2 1 5 5 H 1.48501 * 109.47146 * 29.99737 * 3 2 1 6 6 H 1.48496 * 109.47329 * 150.00031 * 3 2 1 7 7 C 1.40167 * 120.00626 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00641 * 163.38382 * 7 2 1 9 9 C 1.40645 * 120.00025 * 343.38809 * 7 2 1 10 10 C 1.41329 * 121.50209 * 336.41521 * 9 7 2 11 11 C 1.37591 * 119.00181 * 179.97438 * 10 9 7 12 12 N 1.31841 * 122.55196 * 0.02562 * 11 10 9 13 13 C 1.32383 * 122.95528 * 359.96200 * 12 11 10 14 14 N 1.37692 * 133.31136 * 180.02562 * 13 12 11 15 15 H 0.96994 * 125.51565 * 0.06677 * 14 13 12 16 16 C 1.36672 * 108.97619 * 180.02562 * 14 13 12 17 17 C 1.34996 * 109.52547 * 0.26959 * 16 14 13 18 18 C 1.40853 * 107.69180 * 359.57753 * 17 16 14 19 19 H 0.97000 * 120.00686 * 0.02562 * 1 2 3 20 20 H 1.08003 * 120.50012 * 359.95488 * 10 9 7 21 21 H 1.07997 * 118.72226 * 180.02562 * 11 10 9 22 22 H 1.08002 * 125.23947 * 180.02562 * 16 14 13 23 23 H 1.07995 * 126.15177 * 179.71532 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4884 2.0465 -1.4001 5 1 1.4383 2.6527 0.7000 6 1 3.5385 1.4404 0.7000 7 6 2.0079 -1.2138 0.0005 8 1 3.0541 -1.2335 -0.2669 9 6 1.3489 -2.4063 0.3493 10 6 0.1857 -2.3997 1.1520 11 6 -0.4181 -3.5967 1.4615 12 7 0.0464 -4.7558 1.0385 13 6 1.1277 -4.8658 0.2827 14 7 1.7891 -5.9400 -0.2692 15 1 1.5304 -6.8700 -0.1747 16 6 2.8685 -5.4837 -0.9724 17 6 2.9276 -4.1379 -0.8855 18 6 1.8371 -3.7112 -0.1028 19 1 -0.4851 0.8400 -0.0004 20 1 -0.2230 -1.4691 1.5172 21 1 -1.3069 -3.5863 2.0749 22 1 3.5690 -6.1047 -1.5112 23 1 3.6751 -3.5025 -1.3369 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238550938.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:46 Heat of formation + Delta-G solvation = 37.839598 kcal Electronic energy + Delta-G solvation = -10780.469451 eV Core-core repulsion = 8785.892385 eV Total energy + Delta-G solvation = -1994.577066 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.72392 -38.04855 -35.95584 -32.95285 -30.53787 -29.70818 -27.51995 -23.54919 -22.77805 -21.22728 -19.68337 -18.20658 -16.92384 -16.76425 -15.82539 -15.38054 -15.12614 -14.32893 -13.77191 -13.59058 -13.28817 -12.88046 -12.74563 -12.60634 -12.01549 -11.85001 -11.31382 -10.43321 -9.73162 -8.97867 -8.80532 -8.57177 -6.44706 0.64058 1.18104 1.39703 1.52765 1.58483 2.16726 2.20590 2.37017 2.77239 3.77496 4.19677 4.44729 4.56612 4.70539 4.96438 5.09644 5.33472 5.39289 5.50430 5.77593 5.97323 6.12790 6.28833 6.60619 6.76533 6.89998 6.98573 7.84989 8.17915 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.053221 B = 0.013341 C = 0.010953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.984824 B = 2098.226748 C = 2555.827075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.035 3.965 3 Si 0.994 3.006 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.256 1.256 7 C -0.456 4.456 8 H 0.086 0.914 9 C 0.132 3.868 10 C -0.301 4.301 11 C 0.136 3.864 12 N -0.623 5.623 13 C 0.256 3.744 14 N -0.572 5.572 15 H 0.422 0.578 16 C 0.010 3.990 17 C -0.197 4.197 18 C -0.265 4.265 19 H 0.297 0.703 20 H 0.117 0.883 21 H 0.147 0.853 22 H 0.214 0.786 23 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.429 -1.514 -1.499 4.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.184 4.184 3 Si 0.813 3.187 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.180 1.180 7 C -0.485 4.485 8 H 0.104 0.896 9 C 0.124 3.876 10 C -0.327 4.327 11 C -0.021 4.021 12 N -0.346 5.346 13 C 0.026 3.974 14 N -0.180 5.180 15 H 0.260 0.740 16 C -0.115 4.115 17 C -0.223 4.223 18 C -0.272 4.272 19 H 0.108 0.892 20 H 0.135 0.865 21 H 0.164 0.836 22 H 0.231 0.769 23 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.802 -2.326 -1.318 4.648 hybrid contribution 0.228 1.038 -0.125 1.070 sum 4.031 -1.289 -1.443 4.471 Atomic orbital electron populations 1.69824 1.09470 1.31600 1.31034 1.27047 0.95581 1.05038 0.90758 0.85029 0.79064 0.74727 0.79888 1.18199 1.18534 1.17961 1.19831 0.98222 0.91714 1.38704 0.89614 1.18792 0.90854 0.90936 0.87024 1.21771 1.03454 0.98020 1.09471 1.21902 0.97399 0.86935 0.95889 1.65951 1.16866 1.29649 1.22115 1.18653 0.93669 0.87268 0.97794 1.41408 1.24307 1.07093 1.45148 0.73999 1.22206 0.92892 0.94515 1.01888 1.20582 1.00559 0.95112 1.06001 1.20386 1.03047 0.93825 1.09987 0.89193 0.86546 0.83568 0.76929 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.43 10.91 21.86 0.24 -40.19 14 2 C 0.04 1.73 5.22 85.33 0.45 2.17 14 3 Si 0.99 36.19 29.59 68.60 2.03 38.22 14 4 H -0.26 -8.96 7.11 99.48 0.71 -8.25 14 5 H -0.26 -8.93 7.11 99.48 0.71 -8.23 14 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 14 7 C -0.46 -24.51 9.10 23.33 0.21 -24.30 14 8 H 0.09 4.40 7.90 -2.91 -0.02 4.37 14 9 C 0.13 7.54 5.76 -19.78 -0.11 7.43 14 10 C -0.30 -16.71 8.81 22.88 0.20 -16.51 14 11 C 0.14 7.03 11.07 84.54 0.94 7.96 14 12 N -0.62 -32.54 10.30 -193.31 -1.99 -34.54 14 13 C 0.26 12.95 8.45 133.94 1.13 14.08 14 14 N -0.57 -22.07 6.13 -191.87 -1.18 -23.24 14 15 H 0.42 12.93 8.96 -92.71 -0.83 12.10 14 16 C 0.01 0.36 11.86 83.19 0.99 1.35 14 17 C -0.20 -8.61 10.79 22.16 0.24 -8.37 14 18 C -0.26 -14.10 6.25 -19.85 -0.12 -14.23 14 19 H 0.30 13.31 8.29 -92.71 -0.77 12.54 14 20 H 0.12 6.48 6.21 -2.91 -0.02 6.46 14 21 H 0.15 6.47 8.06 -2.91 -0.02 6.45 14 22 H 0.21 4.76 8.06 -2.91 -0.02 4.74 14 23 H 0.14 5.46 8.06 -2.91 -0.02 5.44 14 Total: -1.00 -66.43 211.10 3.43 -63.01 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.41 Total: 27.15 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 3.91 Total: -30.42 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -2.93 Total: -97.96 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Total: -66.43 3.43 -63.01 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238550938.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.848 kcal (2) G-P(sol) polarization free energy of solvation -66.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds