Wall clock time and date at job start Mon Mar 30 2020 02:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86796 * 119.99893 * 2 1 4 4 H 1.48497 * 109.47470 * 269.99792 * 3 2 1 5 5 H 1.48497 * 109.47357 * 30.00216 * 3 2 1 6 6 H 1.48499 * 109.47041 * 149.99837 * 3 2 1 7 7 C 1.40094 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.41033 * 120.00382 * 359.97438 * 7 2 1 10 10 N 1.33701 * 119.98035 * 0.02562 * 9 7 2 11 11 C 1.31625 * 122.34794 * 179.97438 * 10 9 7 12 12 C 1.38540 * 121.33680 * 359.97438 * 11 10 9 13 13 C 1.39733 * 118.98088 * 0.02562 * 12 11 10 14 14 C 1.46387 * 135.46867 * 179.97438 * 13 12 11 15 15 C 1.34202 * 106.09232 * 180.02562 * 14 13 12 16 16 O 1.34434 * 110.09688 * 0.23009 * 15 14 13 17 17 C 1.34303 * 110.95225 * 359.61067 * 16 15 14 18 18 H 0.96998 * 119.99519 * 0.02562 * 1 2 3 19 19 H 1.07998 * 119.33115 * 180.02562 * 11 10 9 20 20 H 1.08001 * 120.51494 * 180.02562 * 12 11 10 21 21 H 1.07999 * 126.95190 * 359.97438 * 14 13 12 22 22 H 1.08002 * 124.94802 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0464 -1.4000 5 1 1.4388 2.6526 0.7001 6 1 3.5388 1.4402 0.7001 7 6 2.0078 -1.2133 0.0005 8 1 3.0877 -1.2133 0.0010 9 6 1.3027 -2.4347 0.0016 10 7 -0.0343 -2.4343 0.0016 11 6 -0.7389 -3.5461 0.0021 12 6 -0.1251 -4.7881 0.0022 13 6 1.2707 -4.8535 0.0022 14 6 2.2650 -5.9278 0.0027 15 6 3.4640 -5.3249 0.0030 16 8 3.3096 -3.9895 0.0078 17 6 2.0085 -3.6565 0.0023 18 1 -0.4849 0.8401 -0.0004 19 1 -1.8174 -3.4889 0.0017 20 1 -0.7163 -5.6919 0.0022 21 1 2.0726 -6.9905 0.0036 22 1 4.4144 -5.8379 0.0038 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238551363.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:23 Heat of formation + Delta-G solvation = 34.300999 kcal Electronic energy + Delta-G solvation = -10932.211507 eV Core-core repulsion = 8839.762334 eV Total energy + Delta-G solvation = -2092.449173 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.17600 -37.15731 -33.78248 -31.68328 -29.63225 -28.69160 -25.78458 -22.18155 -21.46633 -20.11734 -17.58616 -16.59776 -15.84029 -15.01707 -14.94735 -14.00289 -13.39700 -12.94415 -12.17960 -11.84321 -11.56299 -11.34895 -11.19186 -10.78994 -10.59970 -9.88191 -9.64454 -8.99425 -7.80966 -7.69921 -7.32623 -6.54303 -4.56842 2.25098 2.80991 3.04917 3.06252 3.09886 3.53351 3.87455 3.96783 4.67806 5.47296 5.74822 5.82534 6.11320 6.20720 6.36142 6.60478 6.84083 7.01658 7.27981 7.35934 7.57396 7.84278 8.02373 8.13769 8.55421 8.80045 10.01149 10.18962 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.052078 B = 0.013958 C = 0.011050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.528495 B = 2005.575759 C = 2533.261919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.065 3.935 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.411 4.411 8 H 0.089 0.911 9 C 0.287 3.713 10 N -0.485 5.485 11 C 0.122 3.878 12 C -0.300 4.300 13 C -0.075 4.075 14 C -0.239 4.239 15 C -0.019 4.019 16 O -0.185 6.185 17 C -0.085 4.085 18 H 0.276 0.724 19 H 0.126 0.874 20 H 0.097 0.903 21 H 0.139 0.861 22 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.113 -2.778 0.000 4.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.162 4.162 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.442 4.442 8 H 0.107 0.893 9 C 0.159 3.841 10 N -0.202 5.202 11 C -0.038 4.038 12 C -0.325 4.325 13 C -0.080 4.080 14 C -0.259 4.259 15 C -0.087 4.087 16 O -0.083 6.083 17 C -0.136 4.136 18 H 0.088 0.912 19 H 0.143 0.857 20 H 0.115 0.885 21 H 0.157 0.843 22 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 2.703 -1.639 0.008 3.161 hybrid contribution 0.629 -0.589 -0.006 0.861 sum 3.332 -2.228 0.002 4.008 Atomic orbital electron populations 1.70127 1.07322 1.28258 1.26751 1.26114 0.94992 1.01282 0.93780 0.86219 0.80469 0.80189 0.79427 1.19186 1.19899 1.18334 1.19705 0.94686 0.89299 1.40547 0.89279 1.17917 0.87421 0.87883 0.90917 1.68906 1.03779 1.26117 1.21401 1.22376 0.98836 0.88339 0.94225 1.20621 0.91591 0.97815 1.22440 1.19753 0.94500 0.91945 1.01811 1.22234 0.92131 0.98564 1.12970 1.23715 0.99143 0.81575 1.04289 1.83725 1.27112 1.22632 1.74879 1.21291 0.80157 0.97210 1.14926 0.91225 0.85683 0.88515 0.84301 0.79263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.54 11.47 55.55 0.64 -17.91 14 2 C 0.06 1.65 5.50 -17.32 -0.10 1.55 14 3 Si 0.91 18.40 29.56 -169.99 -5.02 13.38 14 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 14 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 14 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 14 7 C -0.41 -11.23 9.14 -37.83 -0.35 -11.57 14 8 H 0.09 2.32 7.85 -52.49 -0.41 1.90 14 9 C 0.29 8.18 6.57 -84.91 -0.56 7.62 14 10 N -0.49 -13.72 7.83 -11.10 -0.09 -13.80 14 11 C 0.12 3.05 11.17 -17.53 -0.20 2.86 14 12 C -0.30 -7.26 10.18 -38.91 -0.40 -7.65 14 13 C -0.07 -1.86 6.46 -105.17 -0.68 -2.54 14 14 C -0.24 -4.88 11.14 -37.73 -0.42 -5.30 14 15 C -0.02 -0.37 11.97 29.31 0.35 -0.02 14 16 O -0.19 -4.44 10.56 5.35 0.06 -4.38 14 17 C -0.09 -2.27 7.19 -37.60 -0.27 -2.54 14 18 H 0.28 6.51 8.29 -40.82 -0.34 6.17 14 19 H 0.13 2.73 8.06 -52.49 -0.42 2.31 14 20 H 0.10 2.06 8.06 -52.49 -0.42 1.63 14 21 H 0.14 2.34 8.06 -52.49 -0.42 1.92 14 22 H 0.19 2.54 8.06 -52.49 -0.42 2.12 14 LS Contribution 208.43 15.07 3.14 3.14 Total: -1.00 -30.59 208.43 -5.12 -35.72 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -1.24 Total: 1.46 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.61 Total: -17.60 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.55 Total: -31.71 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: 0.06 Total: -4.38 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.38 kcal Total LS contribution 3.14 Total: 3.14 kcal Total: -30.59 -5.12 -35.72 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238551363.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.021 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds