Wall clock time and date at job start Mon Mar 30 2020 02:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86799 * 120.00213 * 2 1 4 4 H 1.48497 * 109.47580 * 275.26262 * 3 2 1 5 5 H 1.48501 * 109.46999 * 35.26504 * 3 2 1 6 6 H 1.48506 * 109.47239 * 155.25907 * 3 2 1 7 7 C 1.40006 * 120.00224 * 180.27651 * 2 1 3 8 8 H 1.07997 * 120.00450 * 173.26195 * 7 2 1 9 9 C 1.41324 * 119.99949 * 353.26576 * 7 2 1 10 10 C 1.40954 * 119.63686 * 186.15115 * 9 7 2 11 11 C 1.36793 * 119.66649 * 180.02562 * 10 9 7 12 12 C 1.39445 * 118.66499 * 0.02562 * 11 10 9 13 13 O 1.34642 * 133.50888 * 180.02562 * 12 11 10 14 14 C 1.34405 * 110.88626 * 179.97438 * 13 12 11 15 15 C 1.34084 * 110.27145 * 359.97438 * 14 13 12 16 16 C 1.41185 * 119.14396 * 359.97438 * 12 11 10 17 17 N 1.32349 * 120.75478 * 359.72945 * 16 12 11 18 18 H 0.96998 * 120.00514 * 359.72404 * 1 2 3 19 19 H 1.07997 * 120.16377 * 359.97438 * 10 9 7 20 20 H 1.07998 * 120.67177 * 180.02562 * 11 10 9 21 21 H 1.08000 * 124.86197 * 180.02562 * 14 13 12 22 22 H 1.07993 * 126.86279 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3779 2.1107 -1.3941 5 1 1.4991 2.6180 0.8084 6 1 3.5903 1.4106 0.5860 7 6 2.0076 -1.2124 -0.0059 8 1 3.0819 -1.2152 -0.1156 9 6 1.3083 -2.4328 0.1318 10 6 2.0280 -3.6384 0.2557 11 6 1.3518 -4.8201 0.3884 12 6 -0.0424 -4.7956 0.3966 13 8 -0.9856 -5.7500 0.5073 14 6 -2.2174 -5.2143 0.4594 15 6 -2.1399 -3.8835 0.3156 16 6 -0.7092 -3.5577 0.2688 17 7 -0.0262 -2.4305 0.1478 18 1 -0.4851 0.8400 0.0040 19 1 3.1079 -3.6293 0.2451 20 1 1.8869 -5.7532 0.4849 21 1 -3.1377 -5.7753 0.5279 22 1 -2.9650 -3.1900 0.2479 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238552777.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:54 Heat of formation + Delta-G solvation = 36.115086 kcal Electronic energy + Delta-G solvation = -10861.886049 eV Core-core repulsion = 8769.515540 eV Total energy + Delta-G solvation = -2092.370508 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.09423 -37.23872 -33.42462 -31.80814 -29.89080 -28.90560 -25.71931 -22.25637 -21.18371 -20.07506 -17.60701 -16.65963 -16.00166 -14.98215 -14.93063 -13.95530 -13.20208 -12.50252 -12.17655 -11.88634 -11.66589 -11.42741 -11.15862 -11.03381 -10.61697 -10.10935 -9.30653 -9.29163 -7.57589 -7.54643 -7.43306 -6.40205 -4.52207 2.19595 2.72616 3.09168 3.11333 3.16743 3.49993 3.92365 3.94867 4.72016 5.33276 5.80514 5.86087 6.05452 6.22493 6.41610 6.59136 6.89548 7.09010 7.18302 7.31905 7.46254 7.64681 8.11339 8.24626 8.61699 8.86227 10.04248 10.31356 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.070511 B = 0.011863 C = 0.010200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.003325 B = 2359.689503 C = 2744.511112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.430 4.430 8 H 0.087 0.913 9 C 0.249 3.751 10 C -0.222 4.222 11 C -0.050 4.050 12 C -0.141 4.141 13 O -0.208 6.208 14 C -0.008 4.008 15 C -0.216 4.216 16 C 0.115 3.885 17 N -0.465 5.465 18 H 0.273 0.727 19 H 0.116 0.884 20 H 0.107 0.893 21 H 0.193 0.807 22 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 -2.930 0.476 3.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.158 4.158 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.120 3.880 10 C -0.244 4.244 11 C -0.075 4.075 12 C -0.190 4.190 13 O -0.110 6.110 14 C -0.075 4.075 15 C -0.237 4.237 16 C -0.023 4.023 17 N -0.181 5.181 18 H 0.084 0.916 19 H 0.134 0.866 20 H 0.125 0.875 21 H 0.209 0.791 22 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.339 -2.290 0.428 2.687 hybrid contribution 0.607 0.054 0.084 0.615 sum -0.732 -2.236 0.512 2.408 Atomic orbital electron populations 1.70155 1.07235 1.27770 1.28332 1.26055 0.94876 1.01083 0.93793 0.86309 0.80563 0.80921 0.79022 1.19499 1.20079 1.18449 1.19551 0.94702 0.89325 1.42707 0.89507 1.18598 0.87570 0.91979 0.89879 1.21547 0.99303 0.92898 1.10691 1.19498 0.88320 0.98049 1.01617 1.20224 0.90910 0.88114 1.19738 1.83697 1.13805 1.35994 1.77496 1.23599 0.86811 0.93512 1.03623 1.22138 0.95128 0.95128 1.11301 1.21059 0.93303 0.89650 0.98239 1.68358 1.06870 1.23578 1.19313 0.91597 0.86639 0.87497 0.79059 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.41 11.48 55.55 0.64 -18.78 14 2 C 0.07 1.73 5.49 -17.35 -0.10 1.63 14 3 Si 0.91 18.56 29.56 -169.99 -5.03 13.54 14 4 H -0.27 -5.43 7.11 56.52 0.40 -5.02 14 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 14 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 14 7 C -0.43 -11.50 9.12 -37.75 -0.34 -11.85 14 8 H 0.09 2.12 7.85 -52.49 -0.41 1.71 14 9 C 0.25 6.94 6.54 -84.96 -0.56 6.39 14 10 C -0.22 -5.41 9.75 -39.08 -0.38 -5.79 14 11 C -0.05 -1.17 10.12 -39.66 -0.40 -1.57 14 12 C -0.14 -3.49 7.45 -38.01 -0.28 -3.77 14 13 O -0.21 -4.59 10.57 4.50 0.05 -4.54 14 14 C -0.01 -0.15 11.95 29.27 0.35 0.20 14 15 C -0.22 -4.72 11.14 -37.58 -0.42 -5.14 14 16 C 0.12 3.07 7.54 -83.06 -0.63 2.45 14 17 N -0.47 -13.54 7.93 -7.73 -0.06 -13.60 14 18 H 0.27 6.70 8.29 -40.82 -0.34 6.36 14 19 H 0.12 2.46 8.06 -52.49 -0.42 2.04 14 20 H 0.11 2.10 8.06 -52.49 -0.42 1.67 14 21 H 0.19 2.45 8.06 -52.49 -0.42 2.03 14 22 H 0.14 2.84 8.06 -52.49 -0.42 2.42 14 LS Contribution 208.35 15.07 3.14 3.14 Total: -1.00 -31.19 208.35 -5.26 -36.44 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -1.24 Total: 1.26 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -2.76 Total: -17.46 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.58 Total: -32.37 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: 0.05 Total: -4.54 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 3.14 Total: 3.14 kcal Total: -31.19 -5.26 -36.44 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238552777.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.557 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds