Wall clock time and date at job start Mon Mar 30 2020 02:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86799 * 120.00213 * 2 1 4 4 H 1.48497 * 109.47580 * 275.26262 * 3 2 1 5 5 H 1.48501 * 109.46999 * 35.26504 * 3 2 1 6 6 H 1.48506 * 109.47239 * 155.25907 * 3 2 1 7 7 C 1.40006 * 120.00224 * 180.27651 * 2 1 3 8 8 H 1.07997 * 120.00450 * 173.26195 * 7 2 1 9 9 C 1.41324 * 119.99949 * 353.26576 * 7 2 1 10 10 C 1.40954 * 119.63686 * 186.15115 * 9 7 2 11 11 C 1.36793 * 119.66649 * 180.02562 * 10 9 7 12 12 C 1.39445 * 118.66499 * 0.02562 * 11 10 9 13 13 O 1.34642 * 133.50888 * 180.02562 * 12 11 10 14 14 C 1.34405 * 110.88626 * 179.97438 * 13 12 11 15 15 C 1.34084 * 110.27145 * 359.97438 * 14 13 12 16 16 C 1.41185 * 119.14396 * 359.97438 * 12 11 10 17 17 N 1.32349 * 120.75478 * 359.72945 * 16 12 11 18 18 H 0.96998 * 120.00514 * 359.72404 * 1 2 3 19 19 H 1.07997 * 120.16377 * 359.97438 * 10 9 7 20 20 H 1.07998 * 120.67177 * 180.02562 * 11 10 9 21 21 H 1.08000 * 124.86197 * 180.02562 * 14 13 12 22 22 H 1.07993 * 126.86279 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3779 2.1107 -1.3941 5 1 1.4991 2.6180 0.8084 6 1 3.5903 1.4106 0.5860 7 6 2.0076 -1.2124 -0.0059 8 1 3.0819 -1.2152 -0.1156 9 6 1.3083 -2.4328 0.1318 10 6 2.0280 -3.6384 0.2557 11 6 1.3518 -4.8201 0.3884 12 6 -0.0424 -4.7956 0.3966 13 8 -0.9856 -5.7500 0.5073 14 6 -2.2174 -5.2143 0.4594 15 6 -2.1399 -3.8835 0.3156 16 6 -0.7092 -3.5577 0.2688 17 7 -0.0262 -2.4305 0.1478 18 1 -0.4851 0.8400 0.0040 19 1 3.1079 -3.6293 0.2451 20 1 1.8869 -5.7532 0.4849 21 1 -3.1377 -5.7753 0.5279 22 1 -2.9650 -3.1900 0.2479 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238552777.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:54 Heat of formation + Delta-G solvation = 15.470028 kcal Electronic energy + Delta-G solvation = -10862.781286 eV Core-core repulsion = 8769.515540 eV Total energy + Delta-G solvation = -2093.265745 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.85367 -39.12610 -35.33619 -33.59964 -31.77965 -30.73103 -27.62681 -24.09400 -23.06269 -21.80926 -19.52411 -18.39530 -17.79930 -16.74528 -16.71950 -15.75403 -14.93418 -14.25584 -13.90840 -13.82531 -13.39608 -13.23410 -12.83727 -12.74581 -12.50291 -11.84440 -11.15418 -11.10002 -9.50055 -9.48465 -9.22291 -8.30205 -6.52478 0.45413 0.84184 1.41676 1.51305 1.58008 1.76211 2.23123 2.26636 2.80636 3.73414 3.82682 4.10386 4.34097 4.61788 4.66527 4.80909 5.10020 5.28484 5.35212 5.45109 5.72795 5.80068 6.18188 6.40795 6.70488 6.89763 8.10366 8.44952 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.070511 B = 0.011863 C = 0.010200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.003325 B = 2359.689503 C = 2744.511112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.019 3.981 3 Si 0.992 3.008 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.250 1.250 7 C -0.462 4.462 8 H 0.101 0.899 9 C 0.212 3.788 10 C -0.235 4.235 11 C -0.047 4.047 12 C -0.158 4.158 13 O -0.208 6.208 14 C 0.035 3.965 15 C -0.255 4.255 16 C 0.073 3.927 17 N -0.509 5.509 18 H 0.278 0.722 19 H 0.142 0.858 20 H 0.147 0.853 21 H 0.261 0.739 22 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.669 -3.701 0.662 3.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.202 4.202 3 Si 0.812 3.188 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.173 1.173 7 C -0.495 4.495 8 H 0.119 0.881 9 C 0.083 3.917 10 C -0.257 4.257 11 C -0.072 4.072 12 C -0.208 4.208 13 O -0.109 6.109 14 C -0.031 4.031 15 C -0.276 4.276 16 C -0.063 4.063 17 N -0.226 5.226 18 H 0.089 0.911 19 H 0.159 0.841 20 H 0.164 0.836 21 H 0.276 0.724 22 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.234 -3.097 0.614 3.390 hybrid contribution 0.462 0.135 0.033 0.482 sum -0.772 -2.962 0.647 3.128 Atomic orbital electron populations 1.70287 1.09263 1.29097 1.29568 1.27098 0.95663 1.04928 0.92522 0.85052 0.79166 0.75317 0.79287 1.18697 1.19595 1.17287 1.20019 0.95585 0.90079 1.43786 0.88117 1.19183 0.88036 0.93853 0.90647 1.21780 1.00593 0.92362 1.10938 1.19918 0.88167 0.99241 0.99839 1.20485 0.92006 0.88234 1.20035 1.83726 1.14566 1.35393 1.77190 1.24762 0.87278 0.92770 0.98337 1.22454 0.93611 0.97115 1.14438 1.21853 0.95776 0.90064 0.98636 1.68305 1.07859 1.25355 1.21110 0.91145 0.84070 0.83561 0.72383 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -42.77 11.48 21.83 0.25 -42.52 14 2 C 0.02 1.00 5.49 85.28 0.47 1.46 14 3 Si 0.99 38.35 29.56 68.60 2.03 40.38 14 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 14 5 H -0.27 -10.15 7.11 99.48 0.71 -9.45 14 6 H -0.25 -9.09 7.11 99.48 0.71 -8.38 14 7 C -0.46 -25.28 9.12 23.46 0.21 -25.07 14 8 H 0.10 4.96 7.85 -2.91 -0.02 4.94 14 9 C 0.21 12.19 6.54 40.32 0.26 12.45 14 10 C -0.23 -11.48 9.75 22.60 0.22 -11.26 14 11 C -0.05 -2.16 10.12 22.22 0.22 -1.93 14 12 C -0.16 -7.75 7.45 23.29 0.17 -7.58 14 13 O -0.21 -8.60 10.57 -6.81 -0.07 -8.67 14 14 C 0.04 1.19 11.95 66.87 0.80 1.99 14 15 C -0.26 -10.98 11.14 23.57 0.26 -10.71 14 16 C 0.07 3.97 7.54 42.03 0.32 4.29 14 17 N -0.51 -30.72 7.93 -178.37 -1.41 -32.14 14 18 H 0.28 14.12 8.29 -92.71 -0.77 13.35 14 19 H 0.14 5.92 8.06 -2.91 -0.02 5.90 14 20 H 0.15 5.34 8.06 -2.91 -0.02 5.32 14 21 H 0.26 5.00 8.06 -2.91 -0.02 4.97 14 22 H 0.16 6.13 8.06 -2.91 -0.02 6.10 14 Total: -1.00 -70.55 208.35 4.97 -65.58 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 1.24 Total: 13.73 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 2.94 Total: -36.35 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -1.16 Total: -74.66 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.07 Total: -8.67 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -70.55 4.97 -65.58 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238552777.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.048 kcal (2) G-P(sol) polarization free energy of solvation -70.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds