Wall clock time and date at job start Mon Mar 30 2020 02:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39565 * 120.51719 * 25.37133 * 3 2 1 5 5 C 1.37815 * 120.10409 * 179.71565 * 4 3 2 6 6 C 1.39288 * 121.23558 * 0.57472 * 5 4 3 7 7 O 1.35785 * 119.47063 * 179.68965 * 6 5 4 8 8 C 1.38033 * 121.06217 * 359.70996 * 6 5 4 9 9 C 1.40667 * 119.79710 * 0.02562 * 8 6 5 10 10 C 1.40832 * 120.58331 * 179.97438 * 9 8 6 11 11 H 1.07996 * 119.99620 * 156.10862 * 10 9 8 12 12 C 1.40220 * 119.99910 * 336.10204 * 10 9 8 13 13 N 1.30667 * 120.00577 * 341.64746 * 12 10 9 14 14 Si 1.86807 * 119.99762 * 161.64035 * 12 10 9 15 15 H 1.48499 * 109.46935 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46806 * 120.00402 * 14 12 10 17 17 H 1.48496 * 109.47337 * 240.00370 * 14 12 10 18 18 H 1.08001 * 119.94727 * 359.97438 * 4 3 2 19 19 H 1.08003 * 119.38328 * 180.26289 * 5 4 3 20 20 H 0.96694 * 114.00092 * 270.02482 * 7 6 5 21 21 H 1.08002 * 120.10258 * 180.02562 * 8 6 5 22 22 H 0.96994 * 120.00171 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2773 -1.0854 -0.5152 5 6 4.6554 -1.0733 -0.5163 6 6 5.3686 0.0053 0.0016 7 8 6.7261 -0.0232 -0.0119 8 6 4.7177 1.1025 0.5286 9 6 3.3116 1.1388 0.5470 10 6 2.6305 2.2497 1.0813 11 1 1.6207 2.4667 0.7659 12 6 3.2635 3.0738 2.0227 13 7 4.3120 2.6401 2.6707 14 14 2.6079 4.7921 2.3504 15 1 1.4203 5.0404 1.4941 16 1 2.2207 4.9100 3.7792 17 1 3.6610 5.7916 2.0389 18 1 2.7453 -1.9348 -0.9174 19 1 5.1924 -1.9181 -0.9217 20 1 7.1192 -0.4141 0.7803 21 1 5.2862 1.9305 0.9257 22 1 4.7496 3.2101 3.3222 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238711975.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:24 Heat of formation + Delta-G solvation = -26.507311 kcal Electronic energy + Delta-G solvation = -10643.925850 eV Core-core repulsion = 8548.839831 eV Total energy + Delta-G solvation = -2095.086019 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.96691 -37.87459 -36.65266 -35.50959 -31.74869 -30.54813 -27.58965 -23.76800 -23.01496 -19.74905 -19.27400 -18.26434 -16.95871 -16.13376 -15.88463 -15.06897 -14.59058 -14.50494 -14.15368 -13.72167 -13.49366 -13.21965 -12.87039 -12.50087 -12.30242 -12.05707 -11.96463 -11.21555 -10.99871 -9.57806 -9.19264 -8.85739 -6.59016 0.29879 0.94732 1.35985 1.47390 1.50651 2.02885 2.12600 2.27047 2.63740 3.47843 3.63398 3.75560 4.37900 4.70199 4.93831 5.04537 5.19038 5.37486 5.68381 5.87946 5.97062 6.05404 6.30305 6.62110 6.67954 6.94409 7.18767 8.05095 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.030372 B = 0.016588 C = 0.011057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.671880 B = 1687.582453 C = 2531.614949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C 0.307 3.693 3 C -0.217 4.217 4 C -0.008 4.008 5 C -0.268 4.268 6 C 0.147 3.853 7 O -0.516 6.516 8 C -0.216 4.216 9 C 0.139 3.861 10 C -0.464 4.464 11 H 0.072 0.928 12 C 0.044 3.956 13 N -0.783 5.783 14 Si 0.980 3.020 15 H -0.266 1.266 16 H -0.260 1.260 17 H -0.252 1.252 18 H 0.133 0.867 19 H 0.134 0.866 20 H 0.403 0.597 21 H 0.118 0.882 22 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.919 -0.407 0.279 4.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.209 5.209 2 C -0.002 4.002 3 C -0.223 4.223 4 C -0.029 4.029 5 C -0.287 4.287 6 C 0.102 3.898 7 O -0.329 6.329 8 C -0.236 4.236 9 C 0.133 3.867 10 C -0.491 4.491 11 H 0.090 0.910 12 C -0.177 4.177 13 N -0.405 5.405 14 Si 0.800 3.200 15 H -0.190 1.190 16 H -0.184 1.184 17 H -0.176 1.176 18 H 0.151 0.849 19 H 0.151 0.849 20 H 0.261 0.739 21 H 0.136 0.864 22 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.285 -0.106 -0.067 3.288 hybrid contribution 0.237 0.480 0.741 0.914 sum 3.523 0.374 0.674 3.606 Atomic orbital electron populations 1.81000 1.13111 1.11439 1.15334 1.25924 0.92840 0.90847 0.90567 1.17181 0.83129 0.99732 1.22261 1.20677 0.93570 0.94906 0.93738 1.20686 0.93419 1.00720 1.13907 1.18559 0.82269 0.93489 0.95523 1.84598 1.16709 1.85150 1.46397 1.21419 0.93766 1.00485 1.07893 1.18546 0.91600 0.89454 0.87091 1.19904 1.01103 1.08156 1.19951 0.90959 1.26803 0.94087 1.03629 0.93229 1.69714 1.16443 1.38237 1.16113 0.85169 0.79610 0.76003 0.79224 1.19000 1.18411 1.17599 0.84871 0.84858 0.73915 0.86379 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.78 18.54 19.01 0.35 -25.43 14 2 C 0.31 14.61 14.29 88.33 1.26 15.87 14 3 C -0.22 -10.06 5.95 -19.54 -0.12 -10.17 14 4 C -0.01 -0.33 9.75 22.49 0.22 -0.11 14 5 C -0.27 -10.14 9.91 22.42 0.22 -9.92 14 6 C 0.15 6.06 6.67 22.47 0.15 6.21 14 7 O -0.52 -18.26 13.46 -91.14 -1.23 -19.49 14 8 C -0.22 -10.21 8.63 22.81 0.20 -10.02 14 9 C 0.14 6.93 5.74 -19.88 -0.11 6.81 14 10 C -0.46 -23.57 8.58 23.39 0.20 -23.37 14 11 H 0.07 3.77 7.37 -2.91 -0.02 3.75 14 12 C 0.04 2.01 5.14 85.35 0.44 2.45 14 13 N -0.78 -36.08 10.97 21.87 0.24 -35.84 14 14 Si 0.98 35.41 29.60 68.60 2.03 37.44 14 15 H -0.27 -9.97 7.11 99.48 0.71 -9.26 14 16 H -0.26 -8.93 7.11 99.48 0.71 -8.22 14 17 H -0.25 -8.49 7.11 99.48 0.71 -7.78 14 18 H 0.13 4.37 8.06 -2.91 -0.02 4.35 14 19 H 0.13 4.23 8.06 -2.91 -0.02 4.20 14 20 H 0.40 10.17 9.06 -74.06 -0.67 9.50 14 21 H 0.12 5.82 6.16 -2.91 -0.02 5.80 14 22 H 0.30 12.21 8.29 -92.71 -0.77 11.44 14 Total: -1.00 -56.22 215.55 4.45 -51.77 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.59 Total: 13.78 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 2.46 Total: -22.24 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.59 Total: -61.27 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -1.23 Total: -19.49 kcal Atomic # 14 Polarization: 35.41 SS G_CDS: 2.03 Total: 37.44 kcal Total: -56.22 4.45 -51.77 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238711975.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.267 kcal (2) G-P(sol) polarization free energy of solvation -56.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds