Wall clock time and date at job start Mon Mar 30 2020 01:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00118 * 2 1 4 4 H 1.48501 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47060 * 300.00635 * 3 2 1 6 6 H 1.48507 * 109.46977 * 60.00417 * 3 2 1 7 7 C 1.37877 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00120 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99908 * 359.97438 * 7 2 1 10 10 H 1.09009 * 110.64868 * 298.29258 * 9 7 2 11 11 C 1.54457 * 110.88507 * 175.02496 * 9 7 2 12 12 O 1.43895 * 105.08199 * 219.78232 * 11 9 7 13 13 C 1.43788 * 107.10532 * 358.28320 * 12 11 9 14 14 H 1.08997 * 110.16577 * 265.88515 * 13 12 11 15 15 C 1.52999 * 110.11180 * 144.26170 * 13 12 11 16 16 C 1.53006 * 109.46623 * 68.26044 * 15 13 12 17 17 O 1.42906 * 109.46752 * 179.97438 * 16 15 13 18 18 O 1.44393 * 106.16943 * 25.08906 * 13 12 11 19 19 H 0.97004 * 120.00290 * 359.97438 * 1 2 3 20 20 H 1.09003 * 110.31443 * 338.68050 * 11 9 7 21 21 H 1.08997 * 110.32384 * 100.87667 * 11 9 7 22 22 H 1.09000 * 109.47486 * 308.26216 * 15 13 12 23 23 H 1.09001 * 109.47362 * 188.25493 * 15 13 12 24 24 H 1.08993 * 109.46955 * 300.00075 * 16 15 13 25 25 H 1.09000 * 109.47050 * 59.99904 * 16 15 13 26 26 H 0.96698 * 113.99404 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6405 -2.5905 0.8979 11 6 2.2208 -3.6947 -0.1263 12 8 1.5616 -4.6201 -1.0093 13 6 0.2870 -4.0470 -1.3477 14 1 -0.4840 -4.4212 -0.6743 15 6 -0.0725 -4.3821 -2.7966 16 6 -0.3462 -5.8825 -2.9201 17 8 -0.6825 -6.1955 -4.2733 18 8 0.4337 -2.6192 -1.1901 19 1 -0.4851 0.8401 0.0004 20 1 3.1680 -3.3700 -0.5570 21 1 2.3848 -4.1533 0.8488 22 1 0.7568 -4.1092 -3.4493 23 1 -0.9629 -3.8252 -3.0882 24 1 0.5442 -6.4394 -2.6284 25 1 -1.1754 -6.1554 -2.2674 26 1 -0.8696 -7.1319 -4.4254 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258940711.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:03 Heat of formation + Delta-G solvation = -150.488222 kcal Electronic energy + Delta-G solvation = -11869.905513 eV Core-core repulsion = 9527.560270 eV Total energy + Delta-G solvation = -2342.345244 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.088 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.12871 -36.74572 -33.89563 -32.77581 -31.59994 -28.54655 -24.86644 -23.81084 -21.47209 -20.40019 -17.33558 -16.88762 -16.24285 -15.14654 -14.82799 -14.58127 -14.27347 -13.68152 -13.22854 -12.43983 -11.99880 -11.88668 -11.29414 -11.23391 -10.96206 -10.84700 -10.52762 -10.06423 -9.77910 -9.42473 -9.00121 -8.73142 -8.41713 -6.15329 -4.30161 3.24575 3.32553 3.36337 4.23743 4.32093 4.57299 5.10023 5.31168 5.42141 5.59109 5.67913 5.79269 6.06908 6.14128 6.21211 6.36293 6.47218 6.60604 7.03738 7.23563 7.72890 7.74606 8.03477 8.29378 8.78279 9.41805 10.92941 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.068599 B = 0.009709 C = 0.009081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.072488 B = 2883.330670 C = 3082.625461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.070 0.930 9 C 0.180 3.820 10 H 0.039 0.961 11 C 0.026 3.974 12 O -0.407 6.407 13 C 0.221 3.779 14 H 0.054 0.946 15 C -0.115 4.115 16 C 0.082 3.918 17 O -0.576 6.576 18 O -0.351 6.351 19 H 0.264 0.736 20 H 0.073 0.927 21 H 0.061 0.939 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 -8.463 -2.082 8.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.129 4.129 3 Si 0.727 3.273 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.124 3.876 10 H 0.057 0.943 11 C -0.051 4.051 12 O -0.329 6.329 13 C 0.125 3.875 14 H 0.071 0.929 15 C -0.153 4.153 16 C 0.004 3.996 17 O -0.381 6.381 18 O -0.271 6.271 19 H 0.074 0.926 20 H 0.091 0.909 21 H 0.079 0.921 22 H 0.098 0.902 23 H 0.102 0.898 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.274 -7.719 -2.353 8.075 hybrid contribution 0.243 0.287 0.313 0.489 sum -0.031 -7.433 -2.041 7.708 Atomic orbital electron populations 1.70035 1.06189 1.26990 1.46540 1.25098 0.94870 0.99678 0.93269 0.86421 0.80161 0.82958 0.77779 1.19427 1.20651 1.20714 1.20944 0.92884 0.89210 1.54298 0.91163 1.21348 0.87082 0.93681 0.85441 0.94328 1.24122 0.98075 0.90446 0.92424 1.88700 1.31899 1.45114 1.67232 1.23915 0.86278 0.83496 0.93852 0.92860 1.21539 1.03385 0.94309 0.96075 1.22075 0.98668 0.96540 0.82316 1.86479 1.92316 1.30583 1.28726 1.89800 1.72090 1.16982 1.48256 0.92634 0.90889 0.92064 0.90218 0.89829 0.92913 0.93856 0.77884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.47 12.95 55.43 0.72 -24.75 15 2 C 0.08 2.18 5.42 -17.82 -0.10 2.09 15 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 15 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.54 -15.00 8.81 -34.44 -0.30 -15.30 15 8 H 0.07 1.88 7.60 -52.49 -0.40 1.48 15 9 C 0.18 4.71 3.24 -27.12 -0.09 4.62 15 10 H 0.04 1.05 8.14 -51.92 -0.42 0.63 15 11 C 0.03 0.57 7.65 37.92 0.29 0.86 15 12 O -0.41 -8.85 10.98 -59.28 -0.65 -9.50 15 13 C 0.22 4.78 3.88 37.16 0.14 4.93 15 14 H 0.05 1.09 8.14 -51.93 -0.42 0.67 15 15 C -0.12 -2.18 5.70 -26.73 -0.15 -2.33 15 16 C 0.08 1.23 6.97 37.16 0.26 1.49 15 17 O -0.58 -8.19 13.66 -35.23 -0.48 -8.68 15 18 O -0.35 -9.45 10.78 -59.28 -0.64 -10.09 15 19 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 20 H 0.07 1.59 7.71 -51.93 -0.40 1.19 15 21 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 22 H 0.08 1.59 8.14 -51.93 -0.42 1.17 15 23 H 0.08 1.58 8.14 -51.93 -0.42 1.16 15 24 H 0.05 0.78 7.95 -51.93 -0.41 0.37 15 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 15 26 H 0.38 3.24 9.12 45.56 0.42 3.65 15 LS Contribution 230.43 15.07 3.47 3.47 Total: -1.00 -31.88 230.43 -5.02 -36.89 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -2.47 Total: 0.17 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 0.05 Total: -3.64 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.72 Total: -24.75 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -1.77 Total: -28.26 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -31.88 -5.02 -36.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258940711.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.595 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds