Wall clock time and date at job start Mon Mar 30 2020 01:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00118 * 2 1 4 4 H 1.48501 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47060 * 300.00635 * 3 2 1 6 6 H 1.48507 * 109.46977 * 60.00417 * 3 2 1 7 7 C 1.37877 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00120 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99908 * 359.97438 * 7 2 1 10 10 H 1.09009 * 110.64868 * 298.29258 * 9 7 2 11 11 C 1.54457 * 110.88507 * 175.02496 * 9 7 2 12 12 O 1.43895 * 105.08199 * 219.78232 * 11 9 7 13 13 C 1.43788 * 107.10532 * 358.28320 * 12 11 9 14 14 H 1.08997 * 110.16577 * 265.88515 * 13 12 11 15 15 C 1.52999 * 110.11180 * 144.26170 * 13 12 11 16 16 C 1.53006 * 109.46623 * 68.26044 * 15 13 12 17 17 O 1.42906 * 109.46752 * 179.97438 * 16 15 13 18 18 O 1.44393 * 106.16943 * 25.08906 * 13 12 11 19 19 H 0.97004 * 120.00290 * 359.97438 * 1 2 3 20 20 H 1.09003 * 110.31443 * 338.68050 * 11 9 7 21 21 H 1.08997 * 110.32384 * 100.87667 * 11 9 7 22 22 H 1.09000 * 109.47486 * 308.26216 * 15 13 12 23 23 H 1.09001 * 109.47362 * 188.25493 * 15 13 12 24 24 H 1.08993 * 109.46955 * 300.00075 * 16 15 13 25 25 H 1.09000 * 109.47050 * 59.99904 * 16 15 13 26 26 H 0.96698 * 113.99404 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6405 -2.5905 0.8979 11 6 2.2208 -3.6947 -0.1263 12 8 1.5616 -4.6201 -1.0093 13 6 0.2870 -4.0470 -1.3477 14 1 -0.4840 -4.4212 -0.6743 15 6 -0.0725 -4.3821 -2.7966 16 6 -0.3462 -5.8825 -2.9201 17 8 -0.6825 -6.1955 -4.2733 18 8 0.4337 -2.6192 -1.1901 19 1 -0.4851 0.8401 0.0004 20 1 3.1680 -3.3700 -0.5570 21 1 2.3848 -4.1533 0.8488 22 1 0.7568 -4.1092 -3.4493 23 1 -0.9629 -3.8252 -3.0882 24 1 0.5442 -6.4394 -2.6284 25 1 -1.1754 -6.1554 -2.2674 26 1 -0.8696 -7.1319 -4.4254 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258940711.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:02 Heat of formation + Delta-G solvation = -175.840937 kcal Electronic energy + Delta-G solvation = -11871.004890 eV Core-core repulsion = 9527.560270 eV Total energy + Delta-G solvation = -2343.444620 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.088 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.94256 -37.91471 -35.80655 -34.74470 -33.23749 -30.40818 -26.82994 -25.31948 -23.32234 -22.06373 -19.03727 -18.41536 -17.99666 -16.83952 -16.65137 -16.35168 -15.90806 -15.34484 -14.56755 -14.37802 -13.78662 -13.67739 -13.11186 -12.85969 -12.79942 -12.39908 -12.16423 -12.02790 -11.36219 -10.94302 -10.90517 -10.66576 -10.39058 -8.26684 -6.49364 1.40424 1.42238 1.55132 2.35830 2.76857 2.89806 3.16544 3.89177 3.96068 4.09773 4.19190 4.23304 4.35786 4.46621 4.62142 4.73415 4.88812 5.07127 5.23092 5.30328 5.61130 5.98515 6.36816 6.69513 6.91497 7.27508 8.82856 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.068599 B = 0.009709 C = 0.009081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.072488 B = 2883.330670 C = 3082.625461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.973 3.027 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.169 3.831 10 H 0.019 0.981 11 C 0.035 3.965 12 O -0.404 6.404 13 C 0.217 3.783 14 H 0.069 0.931 15 C -0.113 4.113 16 C 0.093 3.907 17 O -0.591 6.591 18 O -0.388 6.388 19 H 0.266 0.734 20 H 0.075 0.925 21 H 0.091 0.909 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.436 -9.051 -2.205 9.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.180 4.180 3 Si 0.796 3.204 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.595 4.595 8 H 0.094 0.906 9 C 0.114 3.886 10 H 0.036 0.964 11 C -0.041 4.041 12 O -0.326 6.326 13 C 0.121 3.879 14 H 0.086 0.914 15 C -0.151 4.151 16 C 0.015 3.985 17 O -0.400 6.400 18 O -0.309 6.309 19 H 0.075 0.925 20 H 0.093 0.907 21 H 0.109 0.891 22 H 0.081 0.919 23 H 0.096 0.904 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 0.356 -8.348 -2.479 8.716 hybrid contribution 0.009 0.385 0.326 0.505 sum 0.364 -7.963 -2.152 8.257 Atomic orbital electron populations 1.70161 1.07923 1.28035 1.47790 1.26037 0.95725 1.03583 0.92675 0.85299 0.79177 0.78046 0.77851 1.18206 1.20702 1.19710 1.21375 0.93487 0.90450 1.54220 0.90555 1.21330 0.87653 0.94983 0.84678 0.96373 1.24045 0.96934 0.89170 0.93983 1.88679 1.31951 1.44678 1.67292 1.24196 0.86525 0.81228 0.95954 0.91372 1.21502 1.02392 0.97413 0.93772 1.21869 0.99828 0.93484 0.83299 1.86408 1.92350 1.33243 1.28019 1.89727 1.72561 1.20351 1.48269 0.92489 0.90693 0.89100 0.91885 0.90377 0.92371 0.91711 0.74855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.13 12.95 21.45 0.28 -53.85 15 2 C 0.02 1.27 5.42 84.66 0.46 1.73 15 3 Si 0.97 43.34 29.54 68.60 2.03 45.37 15 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 7 C -0.56 -31.33 8.81 25.60 0.23 -31.10 15 8 H 0.08 4.05 7.60 -2.91 -0.02 4.03 15 9 C 0.17 8.92 3.24 30.34 0.10 9.02 15 10 H 0.02 1.03 8.14 -2.38 -0.02 1.01 15 11 C 0.03 1.51 7.65 72.48 0.55 2.06 15 12 O -0.40 -16.97 10.98 -125.98 -1.38 -18.35 15 13 C 0.22 9.25 3.88 71.98 0.28 9.53 15 14 H 0.07 2.71 8.14 -2.39 -0.02 2.69 15 15 C -0.11 -4.18 5.70 30.60 0.17 -4.00 15 16 C 0.09 2.59 6.97 71.98 0.50 3.09 15 17 O -0.59 -15.34 13.66 -148.98 -2.04 -17.38 15 18 O -0.39 -21.17 10.78 -125.98 -1.36 -22.53 15 19 H 0.27 14.92 8.31 -92.70 -0.77 14.15 15 20 H 0.07 3.18 7.71 -2.39 -0.02 3.16 15 21 H 0.09 3.35 8.14 -2.39 -0.02 3.33 15 22 H 0.06 2.50 8.14 -2.39 -0.02 2.48 15 23 H 0.08 2.94 8.14 -2.39 -0.02 2.92 15 24 H 0.06 1.57 7.95 -2.39 -0.02 1.55 15 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 15 26 H 0.40 5.68 9.12 -74.06 -0.68 5.01 15 Total: -1.00 -67.73 230.43 0.32 -67.41 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.50 Total: 9.00 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 2.29 Total: -9.67 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.28 Total: -53.85 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -4.78 Total: -58.25 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -67.73 0.32 -67.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258940711.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.431 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds