Wall clock time and date at job start Mon Mar 30 2020 01:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48500 * 109.47154 * 240.00231 * 3 2 1 5 5 H 1.48506 * 109.47078 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47165 * 120.00099 * 3 2 1 7 7 C 1.37878 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99810 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47051 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.46496 * 306.21003 * 10 9 7 12 12 C 1.53854 * 109.60806 * 185.95823 * 10 9 7 13 13 C 1.55136 * 106.90124 * 192.82769 * 12 10 9 14 14 S 1.83468 * 102.20321 * 42.11556 * 13 12 10 15 15 O 1.42102 * 109.47074 * 223.33960 * 14 13 12 16 16 C 1.54272 * 109.60706 * 66.45797 * 10 9 7 17 17 H 0.96994 * 120.00017 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.46662 * 60.00556 * 9 7 2 19 19 H 1.09001 * 109.47526 * 300.00280 * 9 7 2 20 20 H 1.09004 * 109.97746 * 312.18863 * 12 10 9 21 21 H 1.09000 * 109.97677 * 73.42662 * 12 10 9 22 22 H 1.09006 * 110.85800 * 283.94016 * 13 12 10 23 23 H 1.08997 * 110.85873 * 160.29341 * 13 12 10 24 24 H 1.09001 * 110.40303 * 29.08079 * 16 10 9 25 25 H 1.08997 * 110.40494 * 266.66591 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9429 -3.5436 -0.8297 12 6 1.4853 -4.9912 -0.1510 13 6 2.4897 -6.1254 0.1831 14 16 3.3655 -5.4492 1.6465 15 8 4.7598 -5.6920 1.5181 16 6 3.0230 -3.6783 1.3318 17 1 -0.4850 0.8400 0.0004 18 1 0.6242 -2.5567 -0.8904 19 1 0.6247 -2.5572 0.8896 20 1 0.6458 -5.0208 0.5436 21 1 1.1258 -5.1009 -1.1741 22 1 3.1820 -6.2866 -0.6433 23 1 1.9648 -7.0465 0.4364 24 1 2.4129 -3.2611 2.1329 25 1 3.9555 -3.1224 1.2343 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259516385.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:44 Heat of formation + Delta-G solvation = -58.744165 kcal Electronic energy + Delta-G solvation = -9796.939222 eV Core-core repulsion = 7901.325170 eV Total energy + Delta-G solvation = -1895.614052 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -36.37305 -35.21165 -32.70950 -29.87351 -27.02773 -24.50113 -22.01983 -19.37470 -17.11990 -16.31801 -15.41665 -15.03297 -14.34901 -13.59044 -13.31120 -12.70971 -12.59223 -11.96990 -11.60331 -11.26939 -10.99469 -10.92876 -10.55935 -10.46067 -10.05081 -9.57583 -9.20052 -9.09434 -8.39894 -7.84841 -6.03915 -4.05760 2.13497 2.82553 3.31122 3.35539 3.38721 4.17594 4.43151 5.18530 5.27267 5.32314 5.54863 5.68402 5.85417 6.03259 6.22245 6.32416 6.72907 6.78285 6.94982 7.59374 7.71250 7.94607 8.38295 9.00039 9.58483 11.07187 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.067362 B = 0.010213 C = 0.009256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.562432 B = 2741.042429 C = 3024.315543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.033 3.967 10 C -0.082 4.082 11 H 0.059 0.941 12 C -0.109 4.109 13 C -0.423 4.423 14 S 1.177 4.823 15 O -0.875 6.875 16 C -0.388 4.388 17 H 0.261 0.739 18 H 0.018 0.982 19 H 0.023 0.977 20 H 0.080 0.920 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.112 0.888 24 H 0.124 0.876 25 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.319 -9.637 3.965 10.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.071 0.929 9 C -0.005 4.005 10 C -0.102 4.102 11 H 0.077 0.923 12 C -0.147 4.147 13 C -0.561 4.561 14 S 1.379 4.621 15 O -0.871 6.871 16 C -0.528 4.528 17 H 0.071 0.929 18 H 0.036 0.964 19 H 0.041 0.959 20 H 0.098 0.902 21 H 0.089 0.911 22 H 0.103 0.897 23 H 0.130 0.870 24 H 0.142 0.858 25 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.749 -10.027 4.756 11.123 hybrid contribution 1.225 1.828 -2.066 3.018 sum 1.974 -8.199 2.690 8.852 Atomic orbital electron populations 1.69935 1.05978 1.26751 1.50831 1.24995 0.94829 0.99159 0.95345 0.86692 0.79624 0.83261 0.78648 1.20360 1.21229 1.20232 1.21198 0.92947 0.91001 1.50573 0.92886 1.19138 0.93208 0.90586 0.97551 1.21785 0.98134 0.95960 0.94284 0.92261 1.22278 0.97646 0.91837 1.02938 1.28133 1.07881 1.05263 1.14803 1.70158 0.93040 0.92179 1.06719 1.93075 1.28758 1.81514 1.83743 1.27865 1.06309 1.13922 1.04665 0.92915 0.96403 0.95861 0.90172 0.91068 0.89654 0.86972 0.85789 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.29 55.43 0.74 -25.56 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 7 C -0.52 -14.34 8.64 -34.44 -0.30 -14.64 15 8 H 0.05 1.46 7.67 -52.48 -0.40 1.06 15 9 C 0.03 0.81 4.35 -27.88 -0.12 0.68 15 10 C -0.08 -1.61 2.53 -89.51 -0.23 -1.83 15 11 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 12 C -0.11 -1.65 5.78 -25.16 -0.15 -1.80 15 13 C -0.42 -5.62 7.37 38.29 0.28 -5.34 15 14 S 1.18 16.44 14.66 -107.50 -1.58 14.86 15 15 O -0.88 -17.94 18.15 -35.23 -0.64 -18.57 15 16 C -0.39 -6.81 6.26 37.82 0.24 -6.58 15 17 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 18 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 19 H 0.02 0.58 8.01 -51.93 -0.42 0.16 15 20 H 0.08 1.07 8.11 -51.93 -0.42 0.65 15 21 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 23 H 0.11 1.12 8.14 -51.93 -0.42 0.69 15 24 H 0.12 2.04 7.80 -51.93 -0.41 1.64 15 25 H 0.09 1.79 8.14 -51.93 -0.42 1.37 15 LS Contribution 226.09 15.07 3.41 3.41 Total: -1.00 -34.56 226.09 -6.78 -41.34 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -3.32 Total: -4.10 kcal Atomic # 6 Polarization: -27.60 SS G_CDS: -0.37 Total: -27.97 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.74 Total: -25.56 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.64 Total: -18.57 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 16.44 SS G_CDS: -1.58 Total: 14.86 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -34.56 -6.78 -41.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259516385.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.403 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds